View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16687_low_2 (Length: 294)
Name: NF16687_low_2
Description: NF16687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16687_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 12339570 - 12339289
Alignment:
| Q |
1 |
catcgtttgtaaagattcctacaataaaattccaaagtgttttcaaaggttttatgtatcagatgtcagtaaaagaggtatggctttttattcggcatat |
100 |
Q |
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| T |
12339570 |
catcgtttgtaaagattcctacaataaaattccaaagtgtt--caaaggttttatgtatcagatgtcagtaaaagaggtatggctttttactcggcatat |
12339473 |
T |
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| Q |
101 |
gatgcggcagtggagtcaatggacaccgttggagagttatgcaccaatgttggttccatgttatgtgatgtgtacgatggattcagaaacttcgtcgaag |
200 |
Q |
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| T |
12339472 |
gatgcggcagtggagtcaatggacaccgttggagagttatgcactaatgttggttccatgttatgtgatgtgtacgatggatttagaaacttcgttgaag |
12339373 |
T |
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| Q |
201 |
aagcattgtatagaattggtgtaagacctgttgtcctttggttgccatctgatgacactactgaagttgattggcccttcattc |
284 |
Q |
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| T |
12339372 |
aagcattgtatagaattggtgtaagacctgttgtcctttggttgccatctgatgacactgctgaagtttattggcccttcattc |
12339289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 12347666 - 12347530
Alignment:
| Q |
1 |
catcgtttgtaaagattcctacaataaaattccaaagtgttttcaaaggttttatgtatcagatgtcagt-aaaagaggtatgg---------cttttta |
90 |
Q |
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| T |
12347666 |
catcgtttgtaaagattcctaaaataaaattccaaagtg--ttcaaaggttttatgtatcagatgtcagtaaaaagaggtatgggcagtatgacttttaa |
12347569 |
T |
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| Q |
91 |
ttcggcatatgatgcggcagtggagtcaatggacaccgt |
129 |
Q |
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| T |
12347568 |
ttcggtatatgatgcggcaatggagtcaatggaccccgt |
12347530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 12347466 - 12347394
Alignment:
| Q |
183 |
tcagaaacttcgtcgaagaagcattgtatagaattggtgtaagacctgttgtcctttggttgccatctgatga |
255 |
Q |
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| T |
12347466 |
tcagaaattccgtcgagcaagcgttgtatagaattgatgtaagacctgttgtcatttggttaccatctgatga |
12347394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 12393315 - 12393224
Alignment:
| Q |
133 |
agagttatgcaccaatgttggttccatgttatgtgatgtgtacgatggattcagaaacttcgtcgaagaagcattgtatagaattggtgtaa |
224 |
Q |
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| T |
12393315 |
agagttgtgcactaacgttggttctatgttatgcgacgtgtaccatggattcagaagttccgtggaagaagcattgtacggaattggtgtaa |
12393224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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