View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16687_low_3 (Length: 260)
Name: NF16687_low_3
Description: NF16687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16687_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 41306405 - 41306630
Alignment:
| Q |
1 |
acaaaatattatcatttcttcttctaagtagagagtaaaaaacaaattaaagatgtcaaatacacttcgtctggctgttgctgttcttggtattatttcg |
100 |
Q |
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| T |
41306405 |
acaaaatattatcatttcttcttctaagtagagagtaaaaaacaaattaaagatgtcaaatacacttcgtctggctgttgctgttcttggtattatttcg |
41306504 |
T |
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| Q |
101 |
tttgttcgttattaannnnnnnncttaacccttcgatttttgaagaaaaggttcgtaatttgaaattcggccaccaaagtaaagaatgataaagcannnn |
200 |
Q |
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| T |
41306505 |
tttgttcgttattaattttttttcttaacccttcgattt--------------------ttgaaattcggccaccaaagtaaagaatgataaagcatttt |
41306584 |
T |
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| Q |
201 |
nnnncaaactcaagttgttgttgtgaaccatttgagtctaacaatt |
246 |
Q |
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| T |
41306585 |
ttttcgaactcaagttgttgttgtgaaccatttgagtctaacaatt |
41306630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 41296660 - 41296750
Alignment:
| Q |
17 |
tcttcttctaagtagagagtaaaaaacaaattaaagatgtcaaatacacttcgtctggctgttgctgttcttggtattatttcgtttgttc |
107 |
Q |
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|||||||||||||||||| |||| |||||||| || |||||| | ||||||||| ||||||||||||||||||||||| |||||| |||| |
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| T |
41296660 |
tcttcttctaagtagagactaaacaacaaatttaacatgtcagagacacttcgtttggctgttgctgttcttggtatttcttcgttcgttc |
41296750 |
T |
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