View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_high_14 (Length: 491)

Name: NF16688_high_14
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_high_14
NF16688_high_14
[»] chr2 (2 HSPs)
chr2 (443-480)||(44911587-44911624)
chr2 (260-311)||(37844844-37844896)
[»] chr7 (2 HSPs)
chr7 (262-325)||(1431428-1431492)
chr7 (263-324)||(27481415-27481481)
[»] chr4 (1 HSPs)
chr4 (262-308)||(24936214-24936260)
[»] chr3 (1 HSPs)
chr3 (269-309)||(32417255-32417295)


Alignment Details
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 44911587 - 44911624
Alignment:
Q  443 cttagtttttctaccttgcacgttatcatcatcatcat 480  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44911587 cttagtttttctaccttgcacgttatcatcatcatcat 44911624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 37844844 - 37844896
Alignment:
Q  260 tgacttatacataaacacttctaa-ataagcatttatgctataagcacttaag 311  Q
    ||||||||| |||||||||| ||  |||||| |||||||||||||||||||||    
T  37844844 tgacttatagataaacacttatatgataagcttttatgctataagcacttaag 37844896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 1431428 - 1431492
Alignment:
Q  262 acttatacataaacacttctaa-ataagcatttatgctataagcacttaagttatttatccaaaa 325  Q
    |||||||||||||||||| ||  ||||||| |||||||||||| ||||||||| |||||||||||    
T  1431428 acttatacataaacacttatatgataagcacttatgctataagaacttaagttgtttatccaaaa 1431492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 27481415 - 27481481
Alignment:
Q  263 cttatacataaacacttcta-aataagcatttatgctataagcac----ttaagttatttatccaaa 324  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||    ||||||| ||||||||||    
T  27481415 cttatacataaacacttatataataaacatttatgctataagcacctaattaagttgtttatccaaa 27481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 24936260 - 24936214
Alignment:
Q  262 acttatacataaacacttctaaataagcatttatgctataagcactt 308  Q
    |||||||||||| ||||| || |||||| ||||||||||||||||||    
T  24936260 acttatacataaccacttatatataagcctttatgctataagcactt 24936214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 32417255 - 32417295
Alignment:
Q  269 cataaacacttctaaataagcatttatgctataagcactta 309  Q
    ||||||||||| || |||||||||||| |||||||||||||    
T  32417255 cataaacacttatatataagcatttatactataagcactta 32417295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University