View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_high_17 (Length: 454)
Name: NF16688_high_17
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 46602610 - 46602352
Alignment:
| Q |
15 |
atgaaagaaatgtttgatatataagagaggggatacacatacctaatatcttaagattttgaatagagatgcgacgtctccctctattgtagtcttgagt |
114 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46602610 |
atgaaaaaaatatttgatatataagagaggggacacacatacctaatatcttaagattttgaatagagatgtgacgtctccctctattgtagtcttgagt |
46602511 |
T |
|
| Q |
115 |
catttgacccattcttgtttcttccgtgaccccgaactttccaacaaaattttgaagttcaatttacttatatggttgctcttaacctagtatgaatgat |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46602510 |
catttgactcattcttgtttcttccgtgaccccgaactttccaacaaaattttgaagttcaatttacttatatgattgctcttaacctagtatgaatgat |
46602411 |
T |
|
| Q |
215 |
cttcctgacagtcactcatgatccaacactattttagcacatataaaaatagaattgtc |
273 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46602410 |
cttcccgacagtcacttatgatccaacactattttagcacatataaaaatagaattgtc |
46602352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 46602289 - 46602220
Alignment:
| Q |
374 |
gtgaagcaacccgattacttgaaacaatcaagtgtgtggttgaaatgaggttcagcgatgttatttttga |
443 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46602289 |
gtgaagcaacccgattacttcaaacaatcaagtgtgtggttgaaatgaggttcagcgatgttatttttga |
46602220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 37626644 - 37626696
Alignment:
| Q |
22 |
aaatgtttgatatataagagaggggatacacatacctaatatcttaagatttt |
74 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
37626644 |
aaatgttggatatataagagaggtcatacatatacctaatgtcttaagatttt |
37626696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 42059907 - 42059847
Alignment:
| Q |
25 |
tgtttgatatataagagaggggatacacatacctaatatcttaagattttgaatagagatg |
85 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||| ||||| || |||||| |
|
|
| T |
42059907 |
tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatg |
42059847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 7301699 - 7301647
Alignment:
| Q |
22 |
aaatgtttgatatataagagaggggatacacatacctaatatcttaagatttt |
74 |
Q |
| |
|
||||||| ||||||||| |||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
7301699 |
aaatgttagatatataaaagaggggacacatatacctaatatcttaaggtttt |
7301647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University