View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_2 (Length: 947)
Name: NF16688_high_2
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 902; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 902; E-Value: 0
Query Start/End: Original strand, 1 - 930
Target Start/End: Original strand, 42125960 - 42126889
Alignment:
| Q |
1 |
ttttggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatatatcgtgactcgtggag |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42125960 |
ttttggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatagatcgtgactcgtggac |
42126059 |
T |
|
| Q |
101 |
aattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126060 |
aattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagt |
42126159 |
T |
|
| Q |
201 |
aaaagagagatatagataaacacagtgtcacatgcgatgtttgtaacttcatgttcaaataacacaactgctatcatatggaatgatgttttgagcaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126160 |
aaaagagagatatagataaacacagtgtcacatgcgatgtttgtaatttcatgttcaaataacacaactgctatcatatggaatgatgttttgagcaata |
42126259 |
T |
|
| Q |
301 |
aagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattggaatataaaatgttttgctgcttggaactaacctctttaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42126260 |
aagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattggaatataaaatgttttggtgcttggaactaacctctttaa |
42126359 |
T |
|
| Q |
401 |
cattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcctttttgaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126360 |
cattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcctttttgaat |
42126459 |
T |
|
| Q |
501 |
aacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttca |
600 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126460 |
aacagcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttca |
42126559 |
T |
|
| Q |
601 |
gagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaattcttgcaccaagtatctcaa |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126560 |
gagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaattcttgcaccaagtatctcaa |
42126659 |
T |
|
| Q |
701 |
accagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcgcccaccatttgacaaaggcaat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126660 |
accagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcgcccaccatttgacaaaggcaat |
42126759 |
T |
|
| Q |
801 |
tgaatagatggacatttcaggagtaagagcatagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatc |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42126760 |
tgaatagatggacatttcaggagtaagagcgtagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatc |
42126859 |
T |
|
| Q |
901 |
caagaaagtggtgccaaggcaagtgaaaat |
930 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
42126860 |
caagaaagtggtgccaaggcaagtgaaaat |
42126889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 481 - 914
Target Start/End: Original strand, 24929735 - 24930168
Alignment:
| Q |
481 |
ataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggc |
580 |
Q |
| |
|
|||| |||||| ||||||| |||| ||||||||||||| |||||| | |||||| | || ||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
24929735 |
ataacacttccgttttgaacaacagcataaggtccaatagaagaacattttccaatcttaatgggatggagacttagaattccattctttacctcatggc |
24929834 |
T |
|
| Q |
581 |
tttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaaccaat |
680 |
Q |
| |
|
||||||||||||| ||||| | | |||||||||||| || ||||| || |||| ||||| ||||||||||| || |||| || ||||||||| ||||| |
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|
| T |
24929835 |
tttgaaccaaaacaccttctgcaacgacagcttcatctccgattgacaccagagttgggtccgtgatgtcaactgtatcaagcagaactgaggatccaat |
24929934 |
T |
|
| Q |
681 |
tcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcgcc |
780 |
Q |
| |
|
|||||| || | || ||||||||||| || |||||||| |||||| ||||||||||||||| |||||| || |||||||| || | ||||| |||||| |
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|
| T |
24929935 |
tcttgctcccaacatttcaaaccagtactttagaaacactgttcctctgaggtgtgtagccaaaactttagaggaaatttcttgagtcttatatagcgcc |
24930034 |
T |
|
| Q |
781 |
caccatttgacaaaggcaattgaatagatggacatttcaggagtaagagcatagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatg |
880 |
Q |
| |
|
||||| |||||||| | ||||||||||||| || |||| | | | |||||||| ||| | |||||| ||||||| ||||||||||||| ||| | |
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|
| T |
24930035 |
caccacttgacaaaatccgttgaatagatggagatgtcagaggcatgttcatagtttagccctactaaagaacttccaaacaatgaaatgcaaacgcaag |
24930134 |
T |
|
| Q |
881 |
tagaagcaatgcaaaggatccaagaaagtggtgc |
914 |
Q |
| |
|
| ||||| |||||||| ||||||| ||| ||||| |
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|
| T |
24930135 |
tggaagcgatgcaaagaatccaagcaagaggtgc |
24930168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
149 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
221 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||| | ||||| ||||||||| |||||||| |
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|
| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
148 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
224 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| |||||||||| | | || ||||||||||||||||| ||||||||||| |
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|
| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
154 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
220 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| |||| ||||||| ||||||||||||||||| |
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|
| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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