View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_high_23 (Length: 432)

Name: NF16688_high_23
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_high_23
NF16688_high_23
[»] chr3 (24 HSPs)
chr3 (9-432)||(40880924-40881347)
chr3 (16-192)||(40904373-40904551)
chr3 (19-193)||(40899806-40899982)
chr3 (339-430)||(37273135-37273226)
chr3 (330-430)||(36646360-36646460)
chr3 (330-425)||(41724203-41724299)
chr3 (330-424)||(2175833-2175926)
chr3 (348-424)||(2152162-2152238)
chr3 (330-429)||(43115048-43115147)
chr3 (331-429)||(39602189-39602287)
chr3 (345-429)||(1217779-1217863)
chr3 (371-429)||(3015822-3015880)
chr3 (334-432)||(24281044-24281141)
chr3 (344-432)||(1809983-1810071)
chr3 (330-426)||(22214641-22214737)
chr3 (330-430)||(38462273-38462372)
chr3 (345-423)||(30923883-30923961)
chr3 (403-432)||(25182963-25182992)
chr3 (347-428)||(34414764-34414845)
chr3 (379-432)||(34707472-34707525)
chr3 (333-397)||(2719463-2719527)
chr3 (402-430)||(21574554-21574582)
chr3 (377-429)||(27290880-27290932)
chr3 (333-369)||(48323816-48323852)
[»] chr2 (25 HSPs)
chr2 (310-430)||(9556209-9556331)
chr2 (330-427)||(10285852-10285949)
chr2 (333-429)||(28933819-28933914)
chr2 (330-418)||(30552633-30552722)
chr2 (335-418)||(32821806-32821889)
chr2 (323-418)||(43141856-43141951)
chr2 (330-424)||(22681169-22681263)
chr2 (344-430)||(43065428-43065514)
chr2 (341-430)||(15120186-15120275)
chr2 (331-383)||(1899934-1899986)
chr2 (377-429)||(9878661-9878713)
chr2 (338-430)||(35810771-35810863)
chr2 (331-430)||(14316123-14316222)
chr2 (342-425)||(44606093-44606176)
chr2 (331-385)||(9477945-9477999)
chr2 (338-432)||(27699505-27699599)
chr2 (331-425)||(33941902-33941996)
chr2 (347-432)||(34652012-34652097)
chr2 (345-430)||(35378994-35379079)
chr2 (376-432)||(1494422-1494478)
chr2 (345-417)||(1939323-1939395)
chr2 (330-430)||(8017426-8017526)
chr2 (377-421)||(14451037-14451081)
chr2 (366-430)||(31096329-31096393)
chr2 (331-363)||(43199407-43199439)
[»] chr7 (29 HSPs)
chr7 (330-430)||(46082026-46082128)
chr7 (376-432)||(30496743-30496799)
chr7 (333-432)||(33645937-33646035)
chr7 (331-425)||(3610723-3610817)
chr7 (340-425)||(34035919-34036005)
chr7 (330-424)||(38010706-38010800)
chr7 (331-392)||(39907796-39907857)
chr7 (323-432)||(44151452-44151565)
chr7 (333-430)||(44615082-44615179)
chr7 (347-418)||(3468623-3468694)
chr7 (330-361)||(39711453-39711484)
chr7 (323-430)||(48157098-48157205)
chr7 (378-432)||(6857315-6857369)
chr7 (335-425)||(9038109-9038198)
chr7 (371-425)||(15740394-15740448)
chr7 (330-368)||(21453286-21453324)
chr7 (338-408)||(24363601-24363671)
chr7 (332-430)||(28691813-28691911)
chr7 (330-432)||(34754786-34754887)
chr7 (331-397)||(44821952-44822018)
chr7 (344-382)||(47046134-47046172)
chr7 (363-432)||(17983769-17983838)
chr7 (334-383)||(20881661-20881710)
chr7 (377-430)||(33894666-33894719)
chr7 (347-432)||(47427279-47427364)
chr7 (321-425)||(25670569-25670673)
chr7 (402-430)||(28340398-28340426)
chr7 (331-431)||(39542277-39542377)
chr7 (335-430)||(39967917-39968013)
[»] chr4 (19 HSPs)
chr4 (330-432)||(2996565-2996667)
chr4 (330-430)||(53315318-53315418)
chr4 (377-432)||(27123328-27123383)
chr4 (330-432)||(30207547-30207649)
chr4 (330-432)||(45128286-45128388)
chr4 (324-432)||(33534145-33534253)
chr4 (330-430)||(49219131-49219231)
chr4 (377-428)||(1965980-1966031)
chr4 (385-432)||(6428065-6428112)
chr4 (330-429)||(23819081-23819180)
chr4 (348-430)||(1137722-1137804)
chr4 (331-397)||(16494816-16494882)
chr4 (330-399)||(10192276-10192344)
chr4 (338-415)||(11264301-11264378)
chr4 (331-424)||(28300283-28300376)
chr4 (352-429)||(28614787-28614864)
chr4 (336-425)||(46110201-46110290)
chr4 (404-432)||(21683505-21683533)
chr4 (338-430)||(46415770-46415862)
[»] chr6 (30 HSPs)
chr6 (330-429)||(4006706-4006805)
chr6 (371-430)||(10616519-10616578)
chr6 (351-432)||(34939526-34939607)
chr6 (330-430)||(8035126-8035226)
chr6 (330-430)||(30523652-30523751)
chr6 (333-425)||(31624085-31624177)
chr6 (377-432)||(2460127-2460182)
chr6 (344-429)||(7931705-7931790)
chr6 (387-432)||(8348275-8348320)
chr6 (330-430)||(281826-281926)
chr6 (396-432)||(725631-725667)
chr6 (330-418)||(2112192-2112280)
chr6 (338-430)||(20368158-20368250)
chr6 (387-430)||(20377898-20377941)
chr6 (377-432)||(32577962-32578017)
chr6 (371-425)||(1575928-1575982)
chr6 (330-368)||(2727896-2727934)
chr6 (330-428)||(4246402-4246500)
chr6 (371-429)||(9027611-9027669)
chr6 (387-429)||(30863295-30863337)
chr6 (329-429)||(781371-781472)
chr6 (346-419)||(3528811-3528884)
chr6 (377-430)||(5566155-5566208)
chr6 (333-430)||(10476100-10476196)
chr6 (331-368)||(20671905-20671942)
chr6 (330-395)||(31671087-31671152)
chr6 (402-430)||(1669776-1669804)
chr6 (402-430)||(6310228-6310256)
chr6 (402-430)||(31338040-31338068)
chr6 (363-431)||(33832250-33832318)
[»] chr1 (32 HSPs)
chr1 (284-428)||(7218054-7218199)
chr1 (330-429)||(17420195-17420294)
chr1 (330-430)||(25005773-25005875)
chr1 (325-412)||(27887114-27887201)
chr1 (330-428)||(25479573-25479671)
chr1 (338-429)||(11639395-11639486)
chr1 (347-425)||(4699598-4699676)
chr1 (330-424)||(29045896-29045990)
chr1 (335-397)||(35351036-35351098)
chr1 (330-432)||(38867807-38867909)
chr1 (377-430)||(6262777-6262830)
chr1 (332-425)||(37842338-37842431)
chr1 (331-383)||(1432508-1432560)
chr1 (330-418)||(3224415-3224503)
chr1 (331-395)||(4700079-4700143)
chr1 (323-411)||(30257668-30257756)
chr1 (377-425)||(33108605-33108653)
chr1 (331-411)||(36151502-36151582)
chr1 (330-430)||(39270403-39270503)
chr1 (345-407)||(2522636-2522698)
chr1 (345-430)||(10744308-10744393)
chr1 (330-383)||(26946472-26946525)
chr1 (329-430)||(35668963-35669064)
chr1 (371-428)||(43722308-43722365)
chr1 (376-432)||(4548759-4548815)
chr1 (345-397)||(15558224-15558276)
chr1 (330-426)||(17269242-17269338)
chr1 (337-397)||(26779936-26779996)
chr1 (330-431)||(28689429-28689532)
chr1 (323-363)||(34179917-34179957)
chr1 (392-432)||(45234247-45234287)
chr1 (331-383)||(49888760-49888812)
[»] chr8 (12 HSPs)
chr8 (334-424)||(39551193-39551283)
chr8 (347-430)||(14949875-14949958)
chr8 (344-430)||(26473730-26473816)
chr8 (330-432)||(30389091-30389193)
chr8 (371-432)||(8629489-8629550)
chr8 (337-425)||(779044-779132)
chr8 (347-430)||(9540974-9541057)
chr8 (345-431)||(11569434-11569520)
chr8 (371-425)||(11770994-11771048)
chr8 (340-429)||(35220702-35220791)
chr8 (333-425)||(12851171-12851263)
chr8 (402-430)||(45071438-45071466)
[»] chr5 (24 HSPs)
chr5 (345-429)||(41957430-41957514)
chr5 (331-418)||(10272421-10272508)
chr5 (371-432)||(13604825-13604886)
chr5 (331-427)||(37794679-37794774)
chr5 (323-430)||(4619692-4619799)
chr5 (387-430)||(29363057-29363100)
chr5 (330-418)||(15003504-15003592)
chr5 (331-430)||(15246826-15246926)
chr5 (330-397)||(7319398-7319465)
chr5 (341-432)||(12242686-12242777)
chr5 (337-432)||(17368675-17368770)
chr5 (341-432)||(37611191-37611282)
chr5 (341-432)||(37787921-37788012)
chr5 (331-425)||(2568651-2568745)
chr5 (331-425)||(7674641-7674735)
chr5 (392-430)||(10152388-10152426)
chr5 (330-429)||(10391333-10391433)
chr5 (331-397)||(12425564-12425630)
chr5 (330-432)||(14295498-14295600)
chr5 (387-428)||(5531083-5531124)
chr5 (377-430)||(30269711-30269764)
chr5 (334-430)||(15402807-15402903)
chr5 (330-430)||(19369305-19369405)
chr5 (376-432)||(21768173-21768229)
[»] scaffold0003 (1 HSPs)
scaffold0003 (344-426)||(306332-306414)


Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Complemental strand, 40881347 - 40880924
Alignment:
Q  9 cacagacacacacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaac 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40881347 cacaaacacacacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaac 40881248  T
Q  109 attgatggtagcaccaagacctacgaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatctcaatgcaagcatata 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40881247 attgatggtagcaccaagacctaagaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatctcaatgcaaggatata 40881148  T
Q  209 ttatacactacttggataaacagcttaattaataagagtttacaatataagcccttatcatttaagtacttactcataagctatttccataatgaaatat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40881147 ttatacactacttggataaacagcttaattaataagagtttacaatataagcccttatcatttaagtacttactcataagctatttccataatgaaatat 40881048  T
Q  309 aaaaataaagtcagtgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtca 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40881047 aaaaataaagtcagtgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtca 40880948  T
Q  409 taagttgttttcataagctctctc 432  Q
    ||||||||||||||||||||||||    
T  40880947 taagttgttttcataagctctctc 40880924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 40904551 - 40904373
Alignment:
Q  16 acacacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaacattgatg 115  Q
    |||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||     
T  40904551 acacacacacaagatatgagagtaacatacagcaaggccaacagctccaagtccaaagatagcgacagaagaaccgggttttggtttagcaacattgata 40904452  T
Q  116 gtagcaccaagacc--tacgaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatc 192  Q
    ||||||||||||||  ||  |  ||| | ||||||||||||| |||| |||| ||||| ||||||||||| ||||||||    
T  40904451 gtagcaccaagacctatagaagtatggaagcaaattgaattacgaaaacatagactcatcctagttatatgttaatatc 40904373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 40899982 - 40899806
Alignment:
Q  19 cacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaacattgatggta 118  Q
    |||||||| ||||| | |||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |||    
T  40899982 cacactcaaggtataagagtaacataccgcaagcccaacagctccaaggccaaagatagcaacagatgaaccgggttttggtttagctacattgatagta 40899883  T
Q  119 gcaccaagacc--tacgaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatct 193  Q
    |||||||||||  ||  | |||| | ||||||||||||||  || |||| ||||| |||| |||||||| |||||||    
T  40899882 gcaccaagacctgtaaaagcatggaagcaaattgaattagagaaacatagactcagcctaattatatataaatatct 40899806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 37273135 - 37273226
Alignment:
Q  339 ataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||| ||||||||||| ||||| | ||||| ||||  ||||||||| ||||||||||| || ||||||||||||||||| |||||||||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 36646460 - 36646360
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||| ||||| |||||||||||| ||||||||||||  ||||| ||||||| | |||||| |||| || |||| ||||||| |||| ||||||||||    
T  36646460 atataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctct 36646361  T
Q  430 c 430  Q
    |    
T  36646360 c 36646360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 425
Target Start/End: Original strand, 41724203 - 41724299
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttata-aaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    |||||||||||||| ||||||||| | ||||||| ||||  ||||| |||||||| | ||||||||||| || ||||||||||||||||| ||||||    
T  41724203 atataagctataaactgttttcatcagctatccttgagagcttatataaaataagctgaaaacaacttatggacatgtcataagttgtttccataag 41724299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 2175926 - 2175833
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 424  Q
    |||||||||||||||||||| ||||||||| ||| ||||  ||||| ||| ||||| |||||| |||||   |||||||||||||||||||||||    
T  2175926 atataagctataaattgttt-cataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 2175833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 2152238 - 2152162
Alignment:
Q  348 tttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 424  Q
    |||||||||||||||| ||||  ||||| ||| ||||| |||||| ||||||  |||||||||||||||||||||||    
T  2152238 tttcataaactatccttgagagcttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttttcataa 2152162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 43115048 - 43115147
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||||| |||||||||| ||||||| | ||||  ||||  ||||||| | ||||||| ||| || ||||||||||||||||| ||||| ||||    
T  43115048 atataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactct 43115147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 429
Target Start/End: Complemental strand, 39602287 - 39602189
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||| |||||  ||||||||||| ||||| | ||||| |||| |||||||||| ||||||| ||| |  ||||||||||| ||| ||||||||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctct 39602189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 429
Target Start/End: Complemental strand, 1217863 - 1217779
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||| ||||||| ||||| |||| ||| |||| | ||||||||||| || ||||||||||| ||||| | ||||||||    
T  1217863 tgttttcataagctatccttgagaacttatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 1217779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 3015880 - 3015822
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||| |||||||| | |||||| |||| || ||||||||||||||||||||||||||||    
T  3015880 ttattaaaataagatgaaaacatcttatggacatgtcataagttgttttcataagctct 3015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 432
Target Start/End: Original strand, 24281044 - 24281141
Alignment:
Q  334 aagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||||| |||| |||||  ||||| | ||||  |||| ||| |||||| ||||||||||| ||  || |||||||||||||||||||||||||||    
T  24281044 aagctataaactgttgtcatag-ctatcatggagagcttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataagctctctc 24281141  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 1809983 - 1810071
Alignment:
Q  344 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||||||| ||||||||   || ||||| |||||||   ||||||||| | || ||||||||||||||||| | |||||||||||    
T  1809983 ttgttttcataagctatcctacgaaacttatagaaataagcagaaaacaactcatggacatgtcataagttgtttccgtaagctctctc 1810071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 22214737 - 22214641
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagc 426  Q
    |||||| |||||| |||||||||||| ||||||||||||  |||   ||||||| | |||||| |||| || ||||||| | ||| |||||||||||    
T  22214737 atataacctataagttgttttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgtcaaatgtttttttcataagc 22214641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 38462273 - 38462372
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||| |||||||| ||||||||||| |||||| ||| |  ||||  ||||||| | ||||||||||| ||||| ||||||| ||||||  |||||||||    
T  38462273 atatatgctataaactgttttcataagctatccaagatagcttatggaaataagctgaaaacaacttatggtcaagtcataa-ttgtttgtataagctct 38462371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 423
Target Start/End: Complemental strand, 30923961 - 30923883
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcata 423  Q
    ||||||||||| ||||||||||||  ||||| ||||||| | |||||| ||||  | ||||||||||| ||||| ||||    
T  30923961 tgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Complemental strand, 25182992 - 25182963
Alignment:
Q  403 atgtcataagttgttttcataagctctctc 432  Q
    ||||||||||||||||||||||||||||||    
T  25182992 atgtcataagttgttttcataagctctctc 25182963  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 34414845 - 34414764
Alignment:
Q  347 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    ||||||||||||||| | ||||  |||| |||||||| | ||||||||||| |  |||| ||||  ||||||||||||||||    
T  34414845 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaacttatgcgcatgacatagattgttttcataagctc 34414764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 34707525 - 34707472
Alignment:
Q  379 ataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||| ||||||||||| || ||||||| |||||||||||| ||| ||||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctc 34707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 2719463 - 2719527
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    ||||||||||| ||||||||||| ||||| | ||||| |||| |||||||| | | |||||||||    
T  2719463 taagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaactta 2719527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Original strand, 21574554 - 21574582
Alignment:
Q  402 catgtcataagttgttttcataagctctc 430  Q
    |||||||||||||||||||||||||||||    
T  21574554 catgtcataagttgttttcataagctctc 21574582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 27290932 - 27290880
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||| | |||||| |||| || ||||||||||| ||||||||||||||||    
T  27290932 aaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctct 27290880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 48323816 - 48323852
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaa 369  Q
    |||||||||||||||||||||||| |||| |||||||    
T  48323816 taagctataaattgttttcataaattatcatagagaa 48323852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 9556209 - 9556331
Alignment:
Q  310 aaaataaagtca--gtgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtc 407  Q
    ||||||||||||  ||||||  ||| |||||||||| ||||||||||| |||||||||| |  |||| |||||||||| ||| | ||||| || ||||||    
T  9556209 aaaataaagtcaacgtgttttcatacaagctataaactgttttcataagctatcctagaaagcttatgaaaataagttgaaatctacttatggacatgtc 9556308  T
Q  408 ataagttgttttcataagctctc 430  Q
    || ||||||||||||||||||||    
T  9556309 attagttgttttcataagctctc 9556331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 427
Target Start/End: Original strand, 10285852 - 10285949
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 427  Q
    ||||||||||||| | |||| ||||| ||| | ||||||| ||||  ||||||||| |||||| |||| || ||||||||||||| ||||||||||||    
T  10285852 atataagctataagtcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataagct 10285949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 429
Target Start/End: Original strand, 28933819 - 28933914
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||| |||||||||||||||||| ||||||||||||  | ||| ||||||||| |||||| | || |  |||| |||||||||||||||||||||||    
T  28933819 taagttataaattgttttcataagctatcctagagagctgatagaaataagttgaaaacagc-tatgaacatgccataagttgttttcataagctct 28933914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 418
Target Start/End: Complemental strand, 30552722 - 30552633
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaa-caacttacggtcatgtcataagttgttt 418  Q
    |||| ||||||||||| ||||||||||||||||||||||  ||||  ||||||| | |||| |||||||  | |||||||||||||||||    
T  30552722 atatcagctataaattattttcataaactatcctagagagcttatggaaataagctaaaaaccaacttattgacatgtcataagttgttt 30552633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 32821806 - 32821889
Alignment:
Q  335 agctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 418  Q
    ||||||||| ||||||||||| |||||||| |||  ||||| ||||||  | |||||| |||| || |||||||||||||||||    
T  32821806 agctataaactgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgttt 32821889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 43141856 - 43141951
Alignment:
Q  323 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 418  Q
    |||||| |||||||||||||  ||||||||||| |||||||  |||  ||||  ||||||  | ||||||||||| || |||||||||||||||||    
T  43141856 tgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtcataagttgttt 43141951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 22681263 - 22681169
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 424  Q
    |||||||||||||  ||||||||||| ||||||||||||| ||||  ||||||| | |||||| |||| |  ||||| ||  |||||||||||||    
T  22681263 atataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgttgttttcataa 22681169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 430
Target Start/End: Complemental strand, 43065514 - 43065428
Alignment:
Q  344 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||||  |||| | ||||  ||||  ||||||| | ||||||| ||| || |||||||||||||||||||||||||||||    
T  43065514 ttgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 15120186 - 15120275
Alignment:
Q  341 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||| ||| ||||| | ||||  |||| |||||||| |||||||| || | |  ||||||||||||||||| |||||||||||    
T  15120186 aaattgttttcgtaagctatcatggagagcttatcaaaataagcttaaaacagctaatgaacatgtcataagttgtttccataagctctc 15120275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 1899934 - 1899986
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataag 383  Q
    ||||||||||||| |||||||||||||||| ||| |||  |||||||||||||    
T  1899934 tataagctataaaatgttttcataaactattctaaagagtttataaaaataag 1899986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 9878713 - 9878661
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||  ||||||||||| || ||||||||||||||||| ||||||||||    
T  9878713 aaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctct 9878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 35810863 - 35810771
Alignment:
Q  338 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    |||| ||||||||||||  ||||||||||||| |||| ||| |||| | |||| |||||| || || | ||||||||||||  ||||||||||    
T  35810863 tatatattgttttcatacgctatcctagagaacttatgaaagtaagctaaaaataacttatggccaggccataagttgtttctataagctctc 35810771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 14316222 - 14316123
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||||||| ||||||||  | ||| | |||||| |||| ||||||| | |||||| ||||     |||||||||||||||| |||||||||||    
T  14316222 tataagctataaattattttcatatgcaatctttgagaagctatagaaataagctgaaaacagcttatacatatgtcataagttgtttccataagctctc 14316123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 425
Target Start/End: Complemental strand, 44606176 - 44606093
Alignment:
Q  342 aattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||||||||||  ||| ||| |  | |||| ||||| || | ||||||||||| || ||||||||||||||||||||||||    
T  44606176 aattgttttcataagttattctaaaacacttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataag 44606093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 9477945 - 9477999
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtt 385  Q
    |||||| ||||| |||||||||||| ||||||| |||| ||||| ||||||||||    
T  9477945 tataagttataagttgttttcataagctatcctggagaggttatgaaaataagtt 9477999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 27699599 - 27699505
Alignment:
Q  338 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||| |||||||||||||||||| | |||||   ||  ||||||| | |||||| | |  ||| |||||||||||||||||||||| |||||||    
T  27699599 tataagttgttttcataaactatcatggagaatcgatggaaataagctgaaaacagcatgtggtgatgtcataagttgttttcataaactctctc 27699505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 33941902 - 33941996
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    |||||| ||||| |||||||||||| ||||| | ||||  |||| | |||||||| ||| || |||| |  | ||||||||||||||||||||||    
T  33941902 tataagttataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataag 33941996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 34652097 - 34652012
Alignment:
Q  347 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||| ||||| | ||||  ||||  ||||||||| |||||| |||| || |||||||||||||||||  ||||||| ||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataagctttctc 34652012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 430
Target Start/End: Complemental strand, 35379079 - 35378994
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||| ||||| | ||||  |||| |||||||| | ||||||||||| |  || ||||| || |||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctctc 35378994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 1494478 - 1494422
Alignment:
Q  376 aaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||| | ||||||  ||| || ||||||||||| |||||||||||||||||||    
T  1494478 aaaataagctaaaaacagtttatggacatgtcataagctgttttcataagctctctc 1494422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 1939395 - 1939323
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgtt 417  Q
    ||||||||||| |||| || ||||  ||||  ||||||||| |||||| |||| || ||||||||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 8017426 - 8017526
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||| |||| ||||||||||| ||||| | ||||| |||| |||||| |   ||||||| ||| |  ||| ||||||| |||||||||||| |||    
T  8017426 atataagctgtaaactgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttcataagttct 8017525  T
Q  430 c 430  Q
    |    
T  8017526 c 8017526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 14451081 - 14451037
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttca 421  Q
    ||||||| | |||||| |||| |||||||||||||||||||||||    
T  14451081 aaataagctgaaaacagcttatggtcatgtcataagttgttttca 14451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 31096329 - 31096393
Alignment:
Q  366 agaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    |||| |||| ||||||||||||||||| |||| || ||||| || |  |||||||||||||||||    
T  31096329 agaacttatgaaaataagtttaaaacagcttatggacatgttattaactgttttcataagctctc 31096393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 43199407 - 43199439
Alignment:
Q  331 tataagctataaattgttttcataaactatcct 363  Q
    |||||||||||| ||||||||||||||||||||    
T  43199407 tataagctataagttgttttcataaactatcct 43199439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 46082026 - 46082128
Alignment:
Q  330 atataagctataaattgttttcataaac--tatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 427  Q
    ||||||| ||||| ||||||||||| ||  ||| || ||||  |||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  46082026 atataagttataagttgttttcatagacgctattctggagagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagct 46082125  T
Q  428 ctc 430  Q
    |||    
T  46082126 ctc 46082128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 30496743 - 30496799
Alignment:
Q  376 aaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||| | |||||||||||||| |||| |||||| |||||||||||||||||||    
T  30496743 aaaataagctgaaaacaacttacgggcatgccataagctgttttcataagctctctc 30496799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 33646035 - 33645937
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||||| ||||||||||| ||||| | ||||  ||||  ||||||  | |||||||||||  | ||||||||||||||||| |||||||||||||    
T  33646035 taagctataaactgttttcataagctatc-tggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctctctc 33645937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 3610817 - 3610723
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    |||||||||||| |||||||| ||||||||||||||||  ||||| ||||||| | ||||   |||| || |||||||| || ||||| ||||||    
T  3610817 tataagctataagttgttttcgtaaactatcctagagagcttatagaaataagctgaaaaaggcttatggacatgtcattagctgtttccataag 3610723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 34035919 - 34036005
Alignment:
Q  340 taaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtc-atgtcataagttgttttcataag 425  Q
    |||||||||||||||| ||||| ||||||| ||   |||||||||| ||||||||||| |  | |||||||||||| ||||||||||    
T  34035919 taaattgttttcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataag 34036005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 38010706 - 38010800
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 424  Q
    |||||||||||||  ||||||||||| ||||||||||||| ||||  ||||||| | |||||| |||| |  ||||| ||  |||||||||||||    
T  38010706 atataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgttgttttcataa 38010800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 39907796 - 39907857
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaaca 392  Q
    ||||||||||||| ||||||||||||||||| ||||||| | || |||||||| | ||||||    
T  39907796 tataagctataaactgttttcataaactatcttagagaactaatgaaaataagctgaaaaca 39907857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 432
Target Start/End: Complemental strand, 44151565 - 44151452
Alignment:
Q  323 tgtttcaatataagctataaattgttttcataaactatcctagagaag-ttataaaaataagtttaaaacaacttacggtcatgtcat----aagttgtt 417  Q
    |||||| ||||||||||||| ||||||||||||||||| || || ||| ||||  ||||||| | |||||| |||| || ||||||||    || |||||    
T  44151565 tgtttccatataagctataagttgttttcataaactat-cttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcataaaaaaattgtt 44151467  T
Q  418 ttcataagctctctc 432  Q
    |||||||||||||||    
T  44151466 ttcataagctctctc 44151452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 44615179 - 44615082
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||| |||||||||||  || ||| ||||  ||||  ||||||  | |||||| |||  || |||||||||||||||||||||||||||||    
T  44615179 taagctataaactgttttcataagttagccttgagagtttatggaaataacgtgaaaacagcttgtggacatgtcataagttgttttcataagctctc 44615082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 3468623 - 3468694
Alignment:
Q  347 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 418  Q
    ||||||||| ||||||||||||| || |  |||||||||  |||||||||| || |||||||| ||||||||    
T  3468623 ttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 3468694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 361
Target Start/End: Complemental strand, 39711484 - 39711453
Alignment:
Q  330 atataagctataaattgttttcataaactatc 361  Q
    ||||||||||||||||||||||||||||||||    
T  39711484 atataagctataaattgttttcataaactatc 39711453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 430
Target Start/End: Complemental strand, 48157205 - 48157098
Alignment:
Q  323 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcat 422  Q
    ||||| |||||||||||||| ||||||||| || |||| |  ||||  ||||  ||||||| | |||||| |||| || |||| ||||||||||||  ||    
T  48157205 tgttttaatataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagcttatggacatggcataagttgtttctat 48157106  T
Q  423 aagctctc 430  Q
    ||||||||    
T  48157105 aagctctc 48157098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 6857369 - 6857315
Alignment:
Q  378 aataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||| ||||||||||| || |||| |||||| ||||| |||||||||||||    
T  6857369 aataagttgaaaacaacttatggacatggcataagctgtttccataagctctctc 6857315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 9038109 - 9038198
Alignment:
Q  335 agctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||||| ||||||||||||||||| | ||||| || | |||||||| | ||||||| ||| |  ||||||||||| |||||| |||||    
T  9038109 agctataaactgttttcataaactatcatggagaacttgtgaaaataagctgaaaacaa-ttatgaacatgtcataagctgtttttataag 9038198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 15740448 - 15740394
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    |||| |||||||||| |||||| |||| |  ||||||||||||||||||||||||    
T  15740448 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataag 15740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 21453286 - 21453324
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagaga 368  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  21453286 atataagctataaactgttttcataagctatcctagaga 21453324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 24363671 - 24363601
Alignment:
Q  338 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtca 408  Q
    ||||| |||||||||||| ||||||| |||| |||||  ||||||| | ||||||||||| || |||||||    
T  24363671 tataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 430
Target Start/End: Complemental strand, 28691911 - 28691813
Alignment:
Q  332 ataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||| |||| ||||||||||||| ||||||| ||||  |||| |||||||  | | ||||| ||| || || |||||||| |||||||||||| ||||    
T  28691911 ataagttatacattgttttcataagctatcctggagatcttatgaaaataaactgataacaatttatggacaagtcataagctgttttcataagatctc 28691813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 432
Target Start/End: Complemental strand, 34754887 - 34754786
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||  ||| |||||||||||||||||||| ||||  | ||  ||||||| | |||||||||||  | | ||||||||| ||||||| ||||||||    
T  34754887 atataagccgtaagttgttttcataaactatcct-gagagctgatggaaataagctgaaaacaacttataggcttgtcataagatgttttcttaagctct 34754789  T
Q  430 ctc 432  Q
    |||    
T  34754788 ctc 34754786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 44821952 - 44822018
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    |||||| |||||  ||||||||||| |||| || ||||| |||| |||||||||| |||||||||||    
T  44821952 tataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaacaactta 44822018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 47046172 - 47046134
Alignment:
Q  344 ttgttttcataaactatcctagagaagttataaaaataa 382  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  47046172 ttgttttcataagctatcctagagaaattataaaaataa 47046134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 432
Target Start/End: Original strand, 17983769 - 17983838
Alignment:
Q  363 tagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||| ||||  |||||||||||||||||||||||| ||| |||||| | |||| ||| | |||||||    
T  17983769 tagagaacttattgaaataagtttaaaacaacttacggacatatcataaatcgtttccatcaactctctc 17983838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 20881710 - 20881661
Alignment:
Q  334 aagctataaattgttttcataaactatcctagagaagttataaaaataag 383  Q
    ||||||||| |||||||||||||||||| || |||| |||| ||||||||    
T  20881710 aagctataagttgttttcataaactatcttaaagaacttatgaaaataag 20881661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 33894666 - 33894719
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||| | ||||||||||| || ||||||||| | |||||||||||||||||    
T  33894666 aaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctc 33894719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 47427364 - 47427279
Alignment:
Q  347 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||||||||| || ||||  ||| ||||||||| || ||| | ||||  |  |||||||||||||||| |||||||||||||    
T  47427364 ttttcataaactattcttgagagtttaaaaaaataagcttgaaatagcttatagagatgtcataagttgtttccataagctctctc 47427279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 25670673 - 25670569
Alignment:
Q  321 agtgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttc 420  Q
    |||||||  ||||||||||| ||||||||| ||||  |||| | ||||  || | |||||||| | ||||||| |||    |||||||||||||||||||    
T  25670673 agtgttttcatataagctatcaattgtttttataacatatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttc 25670574  T
Q  421 ataag 425  Q
    |||||    
T  25670573 ataag 25670569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 28340426 - 28340398
Alignment:
Q  402 catgtcataagttgttttcataagctctc 430  Q
    |||||||||||||||||||||||||||||    
T  28340426 catgtcataagttgttttcataagctctc 28340398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 431
Target Start/End: Complemental strand, 39542377 - 39542277
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    |||||| ||||| |||||| |||||  |||||| ||||  |||| |||||||||||   | |||| || | ||||||||||||| ||| |||||||||||    
T  39542377 tataagatataagttgtttccataagttatcctggagagcttatgaaaataagtttgttaaaactgacagacatgtcataagttatttccataagctctc 39542278  T
Q  431 t 431  Q
    |    
T  39542277 t 39542277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 39967917 - 39968013
Alignment:
Q  335 agctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtc-atgtcataagttgttttcataagctctc 430  Q
    |||||||| |||||||||||| |||||  |||||| | || |||||||||| |||||| |||| |  | ||| |||||| |||||||||||| ||||    
T  39967917 agctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaacaatgccataagctgttttcataagttctc 39968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 2996565 - 2996667
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||| ||||| |||||||||||| ||||| | ||||   ||| |||||||||| |||| | |||| || ||||||||||||||||||||||||||||    
T  2996565 atataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctct 2996664  T
Q  430 ctc 432  Q
    |||    
T  2996665 ctc 2996667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 53315318 - 53315418
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||||||||||  |||| ||| |||| | ||||||||  |||| |||||||||| |||| | |||| || ||||| ||| ||||||||||||||||||    
T  53315318 atataagctataagctgttctcaaaaacaaacctagagagcttatgaaaataagttaaaaatagcttatggacatgtgatatgttgttttcataagctct 53315417  T
Q  430 c 430  Q
    |    
T  53315418 c 53315418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 27123383 - 27123328
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctc 27123328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 432
Target Start/End: Complemental strand, 30207649 - 30207547
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||||| |||||||||||| ||| | ||||||  ||||  ||||||| | |||||| ||||| | ||||||||| | |||| | |||||||||    
T  30207649 atataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagcttacagacatgtcatatgctgttcttataagctct 30207550  T
Q  430 ctc 432  Q
    |||    
T  30207549 ctc 30207547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 432
Target Start/End: Complemental strand, 45128388 - 45128286
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||||||||||||||||||||| ||||| | |  ||||  ||||||| | |||||| || | || ||||  || |||||||| ||||||||||    
T  45128388 atataagctataaattgttttcataaactgtcctataaagcttatggaaataagctgaaaacagctcatggacatgatatcagttgtttccataagctct 45128289  T
Q  430 ctc 432  Q
    |||    
T  45128288 ctc 45128286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 432
Target Start/End: Complemental strand, 33534253 - 33534145
Alignment:
Q  324 gtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcata 423  Q
    ||||| |||||| ||| || |||||||| |||| |||  | ||||  |||| |||||||| | ||||||||||| ||  |||||| || |||||||||||    
T  33534253 gtttctatataatctacaagttgttttcgtaaattatttttgagagcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcata 33534154  T
Q  424 agctctctc 432  Q
    |||||||||    
T  33534153 agctctctc 33534145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 49219131 - 49219231
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||||| |||||||||||||||||| || |||  ||||  ||||||| | ||||||||||| ||  |||  || | ||||||||||||| |||    
T  49219131 atataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaacttatggagatgctattaattgttttcataaggtct 49219230  T
Q  430 c 430  Q
    |    
T  49219231 c 49219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 1965980 - 1966031
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    ||||||||| |||||| |||| |  |||||||||||||||||||||||||||    
T  1965980 aaataagttaaaaacagcttatgaacatgtcataagttgttttcataagctc 1966031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 432
Target Start/End: Original strand, 6428065 - 6428112
Alignment:
Q  385 ttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||| ||||||| || ||||||||||||||||||||||| |||||||    
T  6428065 ttaaatcaacttatggacatgtcataagttgttttcataatctctctc 6428112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 23819081 - 23819180
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||| |||||  ||||||||||| ||||| |  |||  ||||| ||||||| | ||||||||||| || ||||||||||| ||||||| ||| ||||    
T  23819081 atataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactct 23819180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 1137722 - 1137804
Alignment:
Q  348 tttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||||||| |||||  ||||  ||||||  | ||||||||||| |  ||||||||||| |||||||||||| ||||    
T  1137722 tttcataaactatccaagagagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctc 1137804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 397
Target Start/End: Complemental strand, 16494882 - 16494816
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    |||||||||||| |||||||||||| ||||| | ||||  || ||||| |||||| |||||||||||    
T  16494882 tataagctataagttgttttcataagctatcttggagagcttgtaaaactaagttgaaaacaactta 16494816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 10192276 - 10192344
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacg 399  Q
    ||||||| ||||| ||||||||| || ||||||| |||| | ||| |||||||||| |||||||||||||    
T  10192276 atataagttataagttgttttcaaaagctatcctggaga-gctatgaaaataagttgaaaacaacttacg 10192344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 11264301 - 11264378
Alignment:
Q  338 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttg 415  Q
    ||||| |||||||||||| | ||||||||||  ||||  ||||||||| ||||||  ||| || ||||||||||||||    
T  11264301 tataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttg 11264378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 28300376 - 28300283
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 424  Q
    ||||||||||||| | ||||||||  ||||| |  |||  |||| |||||||||| ||||||||||| |  ||||||||| | |||||||||||    
T  28300376 tataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataa 28300283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 28614864 - 28614787
Alignment:
Q  352 ataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||| ||||||||||||| |||| |||||||| | |||| | |||| ||  ||||||||| |||||| ||||||||||    
T  28614864 ataagctatcctagagaacttatgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataagctct 28614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 46110201 - 46110290
Alignment:
Q  336 gctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    |||||||| ||||||||||| ||||  | ||||  ||||| ||||||| | ||||||||||| |   || ||||||||||||||||||||    
T  46110201 gctataaactgttttcataagctatgattgagagcttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataag 46110290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 432
Target Start/End: Complemental strand, 21683533 - 21683505
Alignment:
Q  404 tgtcataagttgttttcataagctctctc 432  Q
    |||||||||||||||||||||||||||||    
T  21683533 tgtcataagttgttttcataagctctctc 21683505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 46415862 - 46415770
Alignment:
Q  338 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||| || ||||||||| ||||||| ||||  |||  ||||| || | ||||||||||| || ||||||||| ||||||| ||||| |||||    
T  46415862 tataagttcttttcataagctatcctcgagagcttagtaaaattagctgaaaacaacttatggacatgtcataggttgtttgcataaactctc 46415770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 4006706 - 4006805
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||||| |||||||||||| ||||||  |||| ||||| |||||||| | |||| |||||| || ||| || ||||||||||||| |||||||    
T  4006706 atataagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaataacttatggacatatcgtaagttgttttcacaagctct 4006805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 10616578 - 10616519
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||||| | || ||||||||||| ||||||||||||||||| |||||||||||    
T  10616578 ttataaaaataagctgaacacaacttacggacatgtcataagttgtttccataagctctc 10616519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 34939526 - 34939607
Alignment:
Q  351 cataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||| |||||||  ||| |||||  ||||||| | |||||||||||||| | ||||||||||||||| |||||||||||||    
T  34939526 cataagctatcctgaagaggttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctctc 34939607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 8035226 - 8035126
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||||||| || ||||||||||||  ||||||||| |  |||  |||||||||| ||||||| ||| |  ||||||||||||||||||| |||| |||    
T  8035226 atataagctagaagttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgttttcttaagttct 8035127  T
Q  430 c 430  Q
    |    
T  8035126 c 8035126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 30523652 - 30523751
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||||| || ||||||||| ||||||| |||| |||||| |||| |||| |||||| |||| |  |||| |||||||||||| |||||| |||    
T  30523652 atataagctataagtt-ttttcataagctatccttgagaggttatagaaattagttgaaaacagcttatgaacatggcataagttgtttccataagatct 30523750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 425
Target Start/End: Original strand, 31624085 - 31624177
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||||||  ||||||||||  ||||| | ||||| |||| |||||||||| |||||| |||| |  ||||||||||| ||||||||||||    
T  31624085 taagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataag 31624177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 2460182 - 2460127
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctc 2460127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 7931790 - 7931705
Alignment:
Q  344 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||| || |||||||| |||  |||   ||||||| | ||||||||||| |  ||||||||||||||||||||||||||||    
T  7931790 ttgttttcaaaagctatcctacagagcttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctct 7931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 8348275 - 8348320
Alignment:
Q  387 aaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||    
T  8348275 aaaacaacttatggtcatgttataagttgttttcgtaagctctctc 8348320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 281926 - 281826
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||||||||||  ||| ||||||| ||||||||||||  | ||  ||||||| | |||||||||||  | |||||||||||||| || ||| ||||||    
T  281926 atataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctct 281827  T
Q  430 c 430  Q
    |    
T  281826 c 281826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 725667 - 725631
Alignment:
Q  396 tacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||| |||||||||||||||||||||||||||||||    
T  725667 tacggacatgtcataagttgttttcataagctctctc 725631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 418
Target Start/End: Original strand, 2112192 - 2112280
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 418  Q
    |||||| |||||| |||||||||||||||||| |||||   ||||| ||||||    ||||||||||| |  |||||||||||||||||    
T  2112192 atataaactataagttgttttcataaactatcttagagtgcttatagaaataaaccgaaaacaacttatgaacatgtcataagttgttt 2112280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 20368250 - 20368158
Alignment:
Q  338 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||| |||||||||||| || || | ||||| |||| |||||||||| |||  | |||| |  |||||||||||||||||||||||| ||||    
T  20368250 tataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttctc 20368158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 20377941 - 20377898
Alignment:
Q  387 aaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    |||||||||||  | |||||||||||||||||||||||||||||    
T  20377941 aaaacaacttatagacatgtcataagttgttttcataagctctc 20377898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 32578017 - 32577962
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||| | |||||| || | || |||||||||||||||||||||||||||||||    
T  32578017 aaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctc 32577962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 1575928 - 1575982
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    |||| |||||||||| |||||| |||| |  ||||||||||||||||||||||||    
T  1575928 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataag 1575982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 2727934 - 2727896
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagaga 368  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  2727934 atataagctataagttgttttcataagctatcctagaga 2727896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 4246402 - 4246500
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    |||||| ||||||  ||||||||||| ||||  | ||||   |||||||||||||| |||||| |||| || |||||||| |||||||| || ||||||    
T  4246402 atataatctataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggacatgtcatgagttgtttccaaaagctc 4246500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 9027611 - 9027669
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||| |||||||| | ||||||||||| || ||||||||||||| ||| ||||||||||    
T  9027611 ttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 30863295 - 30863337
Alignment:
Q  387 aaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||| |  ||||||||||||||||||||||||||||    
T  30863295 aaaacaacttatgtacatgtcataagttgttttcataagctct 30863337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 429
Target Start/End: Original strand, 781371 - 781472
Alignment:
Q  329 aatataagctataaattgttttcataaactatccta-gagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 427  Q
    ||||||||||||||  | |||||||||| |||| || ||||  ||||| ||||| | | ||||||  | |||| |||||||||| |||||||||||||||    
T  781371 aatataagctataagcttttttcataaattatcttaagagagcttatagaaatatgctgaaaacagttgacggacatgtcataatttgttttcataagct 781470  T
Q  428 ct 429  Q
    ||    
T  781471 ct 781472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 3528811 - 3528884
Alignment:
Q  346 gttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgtttt 419  Q
    |||||||| ||||||| | ||||  |||| |||||||| | ||||||| ||| || ||||||||||||||||||    
T  3528811 gttttcatgaactatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgtttt 3528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 5566208 - 5566155
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||| ||||||||||| || ||||| ||||| ||||||||| |||||||    
T  5566208 aaataagttgaaaacaacttatggacatgtaataagctgttttcattagctctc 5566155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 10476196 - 10476100
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    |||||| ||| |||||||||||| ||||| | |||| | |||| ||||||| | ||||||| |||||  |||||||| || ||||| |||||||||||    
T  10476196 taagctgtaagttgttttcataagctatcttggaga-gctatagaaataagctgaaaacaatttacgagcatgtcattagatgtttccataagctctc 10476100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 20671942 - 20671905
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagaga 368  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  20671942 tataagctttaaattgttttcataaactatcatagaga 20671905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 31671152 - 31671087
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaact 395  Q
    |||||||||||||  ||||||| |||||||||||||| |  |||| |||||||| | |||||||||    
T  31671152 atataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaacaact 31671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 1669804 - 1669776
Alignment:
Q  402 catgtcataagttgttttcataagctctc 430  Q
    |||||||||||||||||||||||||||||    
T  1669804 catgtcataagttgttttcataagctctc 1669776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 6310256 - 6310228
Alignment:
Q  402 catgtcataagttgttttcataagctctc 430  Q
    |||||||||||||||||||||||||||||    
T  6310256 catgtcataagttgttttcataagctctc 6310228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Original strand, 31338040 - 31338068
Alignment:
Q  402 catgtcataagttgttttcataagctctc 430  Q
    |||||||||||||||||||||||||||||    
T  31338040 catgtcataagttgttttcataagctctc 31338068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 33832318 - 33832250
Alignment:
Q  363 tagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctct 431  Q
    |||||||  ||| |||||||| | |||||||||||    |||||||||||||||||||||||| |||||    
T  33832318 tagagaatatatgaaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttctct 33832250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 428
Target Start/End: Complemental strand, 7218199 - 7218054
Alignment:
Q  284 ataagctatttccataatgaaatataaaaataaagtcag--tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaata 381  Q
    |||| ||||||||||||| |||  ||||| ||||||||   |||||  ||||||||||||| |||||||||||| ||||||| ||||| |||| ||||||    
T  7218199 ataatctatttccataataaaaggtaaaa-taaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaata 7218101  T
Q  382 agtttaaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    |||| |||||| |||  |  | |||||||||| ||||||| ||||||    
T  7218100 agttgaaaacagcttgtgaacgtgtcataagtcgttttcacaagctc 7218054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 17420195 - 17420294
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||||||||||| ||||||| ||| |||||  ||| || | ||  ||||||||| ||||||| ||| || ||||| ||||||||||||||||||||||    
T  17420195 atataagctataaactgttttcgtaagctatctcagaaaactaatggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctct 17420294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 25005875 - 25005773
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggt--catgtcataagttgttttcataagct 427  Q
    ||||||||||||| |||||||||||| ||||||| ||||  ||||||||| ||| |||||| | |||||  |   | |||||||||||||||||||||||    
T  25005875 atataagctataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaatatcttactatagaaagtcataagttgttttcataagct 25005776  T
Q  428 ctc 430  Q
    |||    
T  25005775 ctc 25005773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 27887201 - 27887114
Alignment:
Q  325 tttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataag 412  Q
    |||| ||||||||||||| |||||||||||||||||| | ||||   |||||||||||| | ||||||| ||| || |||||||||||    
T  27887201 tttccatataagctataagttgttttcataaactatcatggagagcatataaaaataagctaaaaacaatttatggacatgtcataag 27887114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 25479573 - 25479671
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    ||||| ||||||| |||||||||||| ||||||||||||  |||| |||||||| | ||||||||| | |  ||||||||||  | |||||||||||||    
T  25479573 atataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttcataagctc 25479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 11639486 - 11639395
Alignment:
Q  338 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||| ||||| |||||  ||| |||||||  |||| |||||||| | |||||| |||| || ||||||||||| ||||||||||||||||    
T  11639486 tataaactgtttgcataagttattctagagagcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctct 11639395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 4699676 - 4699598
Alignment:
Q  347 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||||||||||||  ||||  ||||| ||||||| | |||||| |||| |  ||||||||||||||||||||||||    
T  4699676 ttttcataaactatcccggagagcttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataag 4699598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 29045990 - 29045896
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 424  Q
    ||||||||||||| |||||||||||| || |||| ||||  | ||  || || ||| ||| ||||||| || |||||||||||||||||||||||    
T  29045990 atataagctataagttgttttcataagctgtcctggagagatgatggaagtacgttaaaagcaacttatggacatgtcataagttgttttcataa 29045896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 35351036 - 35351098
Alignment:
Q  335 agctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    |||||||| |||| ||||||||||||||||||||  ||| ||||||||| | |||||||||||    
T  35351036 agctataagttgtcttcataaactatcctagagagcttacaaaaataagctgaaaacaactta 35351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 432
Target Start/End: Complemental strand, 38867909 - 38867807
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||| |||| |||||||||||  |||| |  |||| |||| |||||||| | ||||||||| | || ||| ||||||||| ||| ||||||||||    
T  38867909 atataagctttaaactgttttcataagttatcttgaagaacttatgaaaataagctaaaaacaactgatggacatatcataagttatttccataagctct 38867810  T
Q  430 ctc 432  Q
    |||    
T  38867809 ctc 38867807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 6262777 - 6262830
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||| ||||||||||||| || ||| ||||||||| |||||||||||||||    
T  6262777 aaataagcttaaaacaacttatggacatatcataagttattttcataagctctc 6262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 37842431 - 37842338
Alignment:
Q  332 ataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||||||| |||||||||||| ||||| |  |||| ||||||||||||| | |||||  |||| |  |||||||| || ||||||||||||    
T  37842431 ataagctataagttgttttcataagctatcttgaagaacttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataag 37842338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 1432508 - 1432560
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataag 383  Q
    ||||||||||||||||||||||||||||||| | ||||| |||| ||| ||||    
T  1432508 tataagctataaattgttttcataaactatcttggagaacttatgaaagtaag 1432560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 418
Target Start/End: Original strand, 3224415 - 3224503
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 418  Q
    ||||||||||||   |||||| |||| |||| |||||||| |||| |||||||| | | ||||||||| || |||||||||||| ||||    
T  3224415 atataagctatagggtgtttttataagctattctagagaacttatgaaaataagctgagaacaacttatggacatgtcataagtagttt 3224503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 4700143 - 4700079
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaact 395  Q
    ||||||||||||| |||||| |||||||||||| ||||  |||| |||||||| | |||||||||    
T  4700143 tataagctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 411
Target Start/End: Original strand, 30257668 - 30257756
Alignment:
Q  323 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataa 411  Q
    |||||| ||||||||| ||| |||||||||||||||||||| |||   ||||| ||||||| | |||||| |||| |  ||||||||||    
T  30257668 tgtttccatataagctttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagcttatgaacatgtcataa 30257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 33108653 - 33108605
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||||| ||||||||||| ||||||| ||| |||||||||||||||    
T  33108653 aaataagttgaaaacaacttatggtcatggcatgagttgttttcataag 33108605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 411
Target Start/End: Complemental strand, 36151582 - 36151502
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataa 411  Q
    |||||| |||||||||||||| ||||| ||||||| ||  |||| |||||||||| ||||||  ||| || ||||||||||    
T  36151582 tataagttataaattgttttcgtaaacaatcctagtgagcttatgaaaataagttgaaaacaggttatggacatgtcataa 36151502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 39270503 - 39270403
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||| |||||  ||||||||||| ||| | ||||||   ||| |||||||||| |||||| |||| || |||| || ||| ||||||||||||||||    
T  39270503 atataagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggacatgccaaaagctgttttcataagctct 39270404  T
Q  430 c 430  Q
    |    
T  39270403 c 39270403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 2522636 - 2522698
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtc 407  Q
    |||||||||||||||| || ||||| ||||  ||||||||| ||||||| |||||| ||||||    
T  2522636 tgttttcataaactattctggagaatttatggaaataagttgaaaacaaattacggacatgtc 2522698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 10744308 - 10744393
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||| || || ||||||| ||||||||||||| | |||||| |||| |  |||| |||||| |||||||| ||| ||||    
T  10744308 tgttttcataagctgtcttagagaacttataaaaataagatgaaaacagcttatgaacatgccataagctgttttcacaagttctc 10744393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 26946525 - 26946472
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataag 383  Q
    ||||||||||||| | |||||||||| ||||| ||||||||| || ||||||||    
T  26946525 atataagctataagtcgttttcataagctatcttagagaagtcatgaaaataag 26946472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 35668963 - 35669064
Alignment:
Q  329 aatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    ||||||| ||||||| |||||||||||  ||||||  | || ||||  ||||||||| ||||||| ||| || ||| ||||||| || ||||||||| ||    
T  35668963 aatataaactataaactgttttcataacttatcctgtaaaatttatggaaataagttgaaaacaatttatggacatatcataagctgctttcataagttc 35669062  T
Q  429 tc 430  Q
    ||    
T  35669063 tc 35669064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 43722365 - 43722308
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    ||||||||||||| | |||||||| || |  ||||||||||||| |||||||||||||    
T  43722365 ttataaaaataagctgaaaacaacataagaacatgtcataagtttttttcataagctc 43722308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 4548759 - 4548815
Alignment:
Q  376 aaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||| | |||||||||||| | ||||||||||||||||| ||| || ||||||    
T  4548759 aaaataagctaaaaacaacttacaggcatgtcataagttgtttccattaggtctctc 4548815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 15558224 - 15558276
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    |||||||||||  |||||||||||| ||||| ||||||| | |||||||||||    
T  15558224 tgttttcataagatatcctagagaacttatagaaataagctgaaaacaactta 15558276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 426
Target Start/End: Original strand, 17269242 - 17269338
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagc 426  Q
    |||||||| |||| |||||||||||| ||||||| ||||  |||    |||||||| ||||||||| | |  ||||||||||| | |||||||||||    
T  17269242 atataagcaataagttgttttcataagctatcctggagagcttacggtaataagttaaaaacaactcatgaacatgtcataaggtattttcataagc 17269338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 26779996 - 26779936
Alignment:
Q  337 ctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    |||||| |||||||||||| ||||| |  |||| |||| |||||||||| |||||||||||    
T  26779996 ctataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaactta 26779936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 28689532 - 28689429
Alignment:
Q  330 atataagctataaattgttttcataaa--ctatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 427  Q
    ||||||||||||| ||||||||||| |  ||||| | || |  |||| |||||||| | ||||||||||| || ||||||||||| ||||| | |||| |    
T  28689532 atataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagtt 28689433  T
Q  428 ctct 431  Q
    ||||    
T  28689432 ctct 28689429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 34179957 - 34179917
Alignment:
Q  323 tgtttcaatataagctataaattgttttcataaactatcct 363  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  34179957 tgttttaatctaagctataaactgttttcataaactatcct 34179917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 45234247 - 45234287
Alignment:
Q  392 aacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  45234247 aacttaagggcatgtcataagttgttttcataaactctctc 45234287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 49888760 - 49888812
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataag 383  Q
    |||||||||| | |||||||||||| ||||| ||||||| |||| ||||||||    
T  49888760 tataagctattagttgttttcataagctatcttagagaacttatgaaaataag 49888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 39551283 - 39551193
Alignment:
Q  334 aagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 424  Q
    ||||||||| |||||||||||| || |||| ||||  ||||||||||||||| |||||| |||  || ||||||||||||||||| |||||    
T  39551283 aagctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataa 39551193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 430
Target Start/End: Original strand, 14949875 - 14949958
Alignment:
Q  347 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||| |||||||| |||  ||||| ||||||| | |||||| |||| || ||||||||||||| |||||||||||||||    
T  14949875 ttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctc 14949958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 430
Target Start/End: Complemental strand, 26473816 - 26473730
Alignment:
Q  344 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    |||||||||||| ||||||||||||  |||| |||||||||| |||  | ||||  | ||||||||||| |||||||||||||||||    
T  26473816 ttgttttcataagctatcctagagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctctc 26473730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 30389091 - 30389193
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||||   ||||||||||| || |||||||||| |||| |||||||| | ||||||||||| |  |||||||| || | |||||||| |||||    
T  30389091 atataagctatacgctgttttcataagctttcctagagaacttatgaaaataagctgaaaacaacttatgaacatgtcattagctattttcatatgctct 30389190  T
Q  430 ctc 432  Q
    |||    
T  30389191 ctc 30389193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 8629489 - 8629550
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||| | ||||| ||||||||||| | ||||||||||||||||||||||||| ||||||    
T  8629489 ttataaatagaagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctc 8629550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 425
Target Start/End: Complemental strand, 779132 - 779044
Alignment:
Q  337 ctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||| ||||||||||||||||| | ||||   ||  |||||||| | ||||||||||| |  ||||||||||||||||||| ||||    
T  779132 ctataaactgttttcataaactatcttggagagtgtaccaaaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaag 779044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 430
Target Start/End: Complemental strand, 9541057 - 9540974
Alignment:
Q  347 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||| ||||||||||||  || | |||||||| | || |||| ||| || ||||||||||| ||||| |||||||||||    
T  9541057 ttttcataagctatcctagagagcttttgaaaataagctgaacacaaattatggacatgtcataagatgtttccataagctctc 9540974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 431
Target Start/End: Complemental strand, 11569520 - 11569434
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctct 431  Q
    ||||||||||| ||||| | ||||  || | |||||||| | ||||||||||| |  ||||||||||| ||||| ||||||||||||    
T  11569520 tgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctct 11569434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 11771048 - 11770994
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||||||||||| |||||||| ||  | ||| ||||||||||||||||||||    
T  11771048 ttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 11770994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 429
Target Start/End: Complemental strand, 35220791 - 35220702
Alignment:
Q  340 taaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||| ||||||||||| |||| || ||||  ||||||||||||| | |||| | |||| || ||||||||||  ||||||||||| ||||    
T  35220791 taaactgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatgggcatgtcataaactgttttcataaactct 35220702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 425
Target Start/End: Original strand, 12851171 - 12851263
Alignment:
Q  333 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||| ||||||||||||||| || |||| ||||  |||| ||||||||   |||||| |||| |  ||||| ||||| ||||||||||||    
T  12851171 taagctagaaattgttttcataagctttccttgagagcttatgaaaataagccgaaaacatcttatgaacatgttataagctgttttcataag 12851263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Original strand, 45071438 - 45071466
Alignment:
Q  402 catgtcataagttgttttcataagctctc 430  Q
    |||||||||||||||||||||||||||||    
T  45071438 catgtcataagttgttttcataagctctc 45071466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 429
Target Start/End: Complemental strand, 41957514 - 41957430
Alignment:
Q  345 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    ||||||||||| ||||||| ||||| |||| |||||||| | ||||||||||| || ||||||||||| ||||| | ||||||||    
T  41957514 tgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 41957430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 10272508 - 10272421
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 418  Q
    |||||||||||| |||||||||||| | ||| | ||||  |||| |||||||| | |||||||||||| | |||||||||||||||||    
T  10272508 tataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgttt 10272421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 13604886 - 13604825
Alignment:
Q  371 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||| |||||||||| |||||||| || || ||||||||||| |||||||||||||||||||    
T  13604886 ttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctctc 13604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 37794774 - 37794679
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 427  Q
    ||||||||||| ||| ||||||| | |||||||| ||| |||||  ||||||| | |||||| |||| |  ||||||||||||||||||||||||||    
T  37794774 tataagctatagattattttcatgagctatcctataga-gttatcgaaataagctcaaaacagcttatgaacatgtcataagttgttttcataagct 37794679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 430
Target Start/End: Original strand, 4619692 - 4619799
Alignment:
Q  323 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcat 422  Q
    |||||| |||||| ||||||| ||| ||||||| ||||| | ||||| ||||  ||||||| | ||| || |||| |  |||||||| ||||||||||||    
T  4619692 tgtttctatataatctataaactgtcttcataagctatcatggagaacttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcat 4619791  T
Q  423 aagctctc 430  Q
    ||||||||    
T  4619792 aagctctc 4619799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 29363057 - 29363100
Alignment:
Q  387 aaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  29363057 aaaacaacttatgggcatgtcataagttgttttcataagctctc 29363100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 418
Target Start/End: Complemental strand, 15003592 - 15003504
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 418  Q
    ||||||||||||| | |||||||||| |||||| |||||  ||||  |||||| |  |||||||||||||  |||||| ||||||||||    
T  15003592 atataagctataagtggttttcataagctatccaagagagcttatggaaataaatcgaaaacaacttacgaacatgtcgtaagttgttt 15003504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 430
Target Start/End: Original strand, 15246826 - 15246926
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacg-gtcatgtcataagttgttttcataagctct 429  Q
    |||||||||| |  ||||||||||| ||||| ||||||| | |||||||||||||  ||| |||||| |  | ||||||||||||| ||||||||| |||    
T  15246826 tataagctatgagctgttttcataagctatcttagagaaatgataaaaataagttgcaaaaaacttatgaatgatgtcataagttgctttcataagttct 15246925  T
Q  430 c 430  Q
    |    
T  15246926 c 15246926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 7319398 - 7319465
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    |||||||||||||| ||||||| ||| ||||| | ||||| ||||||||||||| | ||| |||||||    
T  7319398 atataagctataaactgttttcgtaagctatcttggagaacttataaaaataagctgaaagcaactta 7319465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 12242777 - 12242686
Alignment:
Q  341 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||||||||| ||||| | ||||  ||||  || |||| | ||||||||| | | |||||||||||||| ||| |||||||||||||    
T  12242777 aaattgttttcataagctatcttggagagcttatggaagtaagctgaaaacaactaatgttcatgtcataagttttttccataagctctctc 12242686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 17368675 - 17368770
Alignment:
Q  337 ctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||| |||||||||||| ||||| | |||| |||||  ||||||| | |||||  | || |  |||||||||||||||||||||||| ||||||    
T  17368675 ctataagttgttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttctctc 17368770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 37611282 - 37611191
Alignment:
Q  341 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||||||||| ||||| | ||||  ||||  ||||||  | |||||| |||| |  ||||||| |||||||||||||||||||||||    
T  37611282 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctc 37611191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 37788012 - 37787921
Alignment:
Q  341 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    ||||||||||||||| ||||| | ||||  ||||  ||||||  | |||||| |||| |  ||||||| |||||||||||||||||||||||    
T  37788012 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctc 37787921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 2568651 - 2568745
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    |||||||||||| |||||||||||| ||||| | ||||  | || |||||||| | |||| |||||| |   |||||||||| ||||||||||||    
T  2568651 tataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataag 2568745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 7674641 - 7674735
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 425  Q
    ||||||| ||||| ||||||||||| ||||| | ||||| || | |||||||| | |||||| ||||    ||||||||||||||||| ||||||    
T  7674641 tataagccataaaatgttttcataagctatcttggagaatttgtgaaaataagctgaaaacaccttataaacatgtcataagttgtttccataag 7674735  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 10152388 - 10152426
Alignment:
Q  392 aacttacggtcatgtcataagttgttttcataagctctc 430  Q
    |||||| || |||||||||||||||||||||||||||||    
T  10152388 aacttatggacatgtcataagttgttttcataagctctc 10152426  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 10391333 - 10391433
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataa--aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 427  Q
    ||||||||||||| ||||||| |||| ||||||||||| |||| |||  ||||||||| ||||||||| |  | ||||||||||  |||||| |||| ||    
T  10391333 atataagctataatttgtttttataagctatcctagag-agttttaaggaaataagttgaaaacaactaatagacatgtcataaagtgtttttataaact 10391431  T
Q  428 ct 429  Q
    ||    
T  10391432 ct 10391433  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 12425564 - 12425630
Alignment:
Q  331 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 397  Q
    ||||||||||||  |||||||| || ||||| | ||||| |||| |||||||||| |||||||||||    
T  12425564 tataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaacaactta 12425630  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 14295498 - 14295600
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||||||||||  ||||||| ||| ||||||| ||||  || || || |||| | |||||| ||||  | ||| ||||||| ||||||||||||||||    
T  14295498 atataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaacagcttatcgacatatcataagctgttttcataagctct 14295597  T
Q  430 ctc 432  Q
    |||    
T  14295598 ctc 14295600  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 5531083 - 5531124
Alignment:
Q  387 aaaacaacttacggtcatgtcataagttgttttcataagctc 428  Q
    ||||||||||| || ||| |||||||||||||||||||||||    
T  5531083 aaaacaacttatggacatatcataagttgttttcataagctc 5531124  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 30269764 - 30269711
Alignment:
Q  377 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||| | ||||||||||| || ||||| |||||||||||| ||||||||||    
T  30269764 aaataagctaaaaacaacttatgggcatgttataagttgttttaataagctctc 30269711  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 430
Target Start/End: Complemental strand, 15402903 - 15402807
Alignment:
Q  334 aagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctc 430  Q
    ||||||||| |||||||||||| ||||  |||||||  |||| |||| || | ||||||||||| |  ||| |||||| |||||||| |||| ||||    
T  15402903 aagctataagttgttttcataacctattttagagaacgtatagaaattagctgaaaacaacttatgaacatatcataatttgttttcgtaagttctc 15402807  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 19369305 - 19369405
Alignment:
Q  330 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 429  Q
    |||||| ||||||  || ||||||||||| ||| |||||  ||||| |||||| || |||||| ||||| | |||||||| || || || ||||||||||    
T  19369305 atataaactataagctggtttcataaactttcccagagagcttatagaaataaattgaaaacagcttacagacatgtcatgagctgcttccataagctct 19369404  T
Q  430 c 430  Q
    |    
T  19369405 c 19369405  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 21768229 - 21768173
Alignment:
Q  376 aaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctc 432  Q
    |||||||||| |||||| | || || ||||||||||| ||||||||||||| |||||    
T  21768229 aaaataagttgaaaacagcgtatggacatgtcataagctgttttcataagcactctc 21768173  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 306332 - 306414
Alignment:
Q  344 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagc 426  Q
    |||||||||||| ||||||||||||  ||||  || |||| | |||||| |||| || ||||||||||| ||||| |||||||    
T  306332 ttgttttcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgtttccataagc 306414  T

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