View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_29 (Length: 400)
Name: NF16688_high_29
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 27297629 - 27297266
Alignment:
| Q |
20 |
aatccgacctctattctatgaggggttgaatagataaaataaaatgtcatgataaattatttaatattcacgtgattattcgaacaaaacacatttcttt |
119 |
Q |
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| T |
27297629 |
aatccgacctctattctatgaggggttgaatagataaaataaaatgtcatgataaattatttaatattcacgtgattattcgaacaaaacacatttcttt |
27297530 |
T |
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| Q |
120 |
aatttaatatcgatataacttatgaatcaagaaaaatattgatgacttatgattaaattgtataatttcttatggtagaaattggtattgtaattgaagt |
219 |
Q |
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| T |
27297529 |
aatttaatatcgatataacttatgaatcaagaaaaatattgatgacttatgattaacttgtataatttcttatggtagaaattggtattgtaattgaagt |
27297430 |
T |
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| Q |
220 |
ggcttaacttgttttcgattttttgttgaaatgaaaatgcaggcatttgaagccacatggggtgcagcatgtaaagtagaggcttcaaccatgctcattc |
319 |
Q |
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| T |
27297429 |
agcttaacttgttttccatttttggttgaaatgaaaatgcaggcatttgaagccacatggggtgcagcatgtaaagtagaggcttcaaccatgctcattc |
27297330 |
T |
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| Q |
320 |
cagcagattacaccttctatgtggggcccattgttttttcgggcccatactgtaaacccagaat |
383 |
Q |
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| T |
27297329 |
cagcagattacaccttctatgtggggcccattgttttttcgggcccatactgtaaacccagaat |
27297266 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 344
Target Start/End: Original strand, 14736561 - 14736650
Alignment:
| Q |
255 |
aatgcaggcatttgaagccacatggggtgcagcatgtaaagtagaggcttcaaccatgctcattccagcagattacaccttctatgtggg |
344 |
Q |
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| T |
14736561 |
aatgcaggcattccaagcaacatgggcagctacatgtaaagtagaagcatcaacaatggtgattccagcaaattacatcttctacgtggg |
14736650 |
T |
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