View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_3 (Length: 886)
Name: NF16688_high_3
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 824; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 4 - 874
Target Start/End: Complemental strand, 27297210 - 27296340
Alignment:
| Q |
4 |
ccatgtttactactacaccaaggtgttcgaagtcatattttggatgtgtattttttcaggtagatggaaccattattgcaccaacaaactccaatgcttg |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27297210 |
ccatatttactactacaccaaggtgttcgaagtcatattttggatgtgtattttttcaggtagatggaaccattattgcaccaacaaactccaatgcttg |
27297111 |
T |
|
| Q |
104 |
gggcagaggactattacagtggttggactttacaaaactggttggatttactattcagggaaatggcattattgatggaagaggttcagtatggtggcaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27297110 |
gggcagaggactattacagtggttggactttacaaaactggttggatttactattcaaggaaatggcatttttgatggaagaggttcagtatggtggcaa |
27297011 |
T |
|
| Q |
204 |
gacactaagtataatgatcctttagatgatgaggaaaaactcttggtacctttaaacaacacaattgtgagcccaccaatgcaggtaatttccattttta |
303 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27297010 |
gacactcagtataatgatcctttagatgatgaggaaaaactcttggtacctttaaacaacacaattgtgagcccaccaatgcaggtaattttcattttta |
27296911 |
T |
|
| Q |
304 |
ccatgcaatttcgcggatttatctcctcgaaagtgatcaattcattttagagtataaaacaagtaatatcaacaattatcagtagtcgatatttcataca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296910 |
ccatgcaatttcgcggatttatctcctcgaaagtgatcaattcattttagagtataaaacaagtaatatcaacaattatcagtagtcgatatttcataca |
27296811 |
T |
|
| Q |
404 |
cactatgaaacgcagacacaaacacaaatgtgacgttgatagcaacacatagacactagtaatagtttaagacaatagaagggatgaaatgtaaccacat |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296810 |
cactatgaaacgcagacacaaacacaaatgtgacgttgatagcaacacatagacactagtaatagtttaagacaatagaagggatgaaatgtaaccacat |
27296711 |
T |
|
| Q |
504 |
gtgtccgtgtcatgtcaatattagacactgacacatgtcgggcaccatacacgcctatttttccgtagaaattttgttgttcacattaagctaatcattt |
603 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27296710 |
gtgtccgtgtcatgtcaatattagacagtgacacatgtcgggcaccatacacgcctatttttccatagaaattttgttgttcacattaagctaatcattt |
27296611 |
T |
|
| Q |
604 |
a-acctttgcgattgtactagattgaaagttcactgggaggaaaaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaa |
702 |
Q |
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| T |
27296610 |
atacctttgcgattgtactagattgaaagttcactgggaggaaaaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaa |
27296511 |
T |
|
| Q |
703 |
tttgatttatgttaaggagatttaggaacataatgaagctaatacatgtttctgtaacaggcaataaggttctatggaagtattaatccaacagtcacag |
802 |
Q |
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| T |
27296510 |
tttgatttatgttaaggagatttaggaacataatgaagctaatacatgtttctgt-acaggctataaggttctatggaagtattaatccaacagtcacag |
27296412 |
T |
|
| Q |
803 |
gcataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatg |
874 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296411 |
gcataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatg |
27296340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 14737167 - 14737306
Alignment:
| Q |
66 |
gatggaaccattattgcaccaacaaactccaatgcttggggcagaggactattacagtggttggactttacaaaactggttggatttactattcagggaa |
165 |
Q |
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||||| || |||||||| ||||||||| | ||||||||| | ||| | | |||||||| |||| || |||||||| | ||| |||| ||||| |||| |
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| T |
14737167 |
gatggtacaattattgctccaacaaacccaaatgcttggagtggagtaacactacagtggctggaattcacaaaactagaaggaattaccattcaaggaa |
14737266 |
T |
|
| Q |
166 |
atggcattattgatggaagaggttcagtatggtggcaaga |
205 |
Q |
| |
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|||| | |||||||||||||| ||||| ||||||||||| |
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| T |
14737267 |
atggtgtcattgatggaagaggctcagtttggtggcaaga |
14737306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 541
Target Start/End: Original strand, 24047906 - 24047956
Alignment:
| Q |
491 |
aatgtaaccacatgtgtccgtgtcatgtcaatattagacactgacacatgt |
541 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||| |||||| |
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| T |
24047906 |
aatgtaactacatgtgtcgttgtcatgtcaatattagacactgaaacatgt |
24047956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 874
Target Start/End: Original strand, 14737638 - 14737723
Alignment:
| Q |
789 |
tccaacagtcacaggcataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatg |
874 |
Q |
| |
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|||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| | || ||||||| |
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| T |
14737638 |
tccaactgtcacgggtataacaattcagaatagtcctcagtgtcatctaaagtttgacaattgcaatggggtccttgttcatgatg |
14737723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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