View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_35 (Length: 378)
Name: NF16688_high_35
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 28127347 - 28127716
Alignment:
| Q |
1 |
aatggtaaaaaataataaggtacacataagtgataactaaatatgtgatattgtacttgtattaatcaaatccacaatcaccagaaatccatcagtcaag |
100 |
Q |
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| T |
28127347 |
aatggtaaaaaataataaagtacacataagtgataactaaatatgtgatattgtacttgtattaatcaaatccacaatcaccagaaatccatcagtcaag |
28127446 |
T |
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| Q |
101 |
tctaggtcctaatattatccttaaatttcttcgtatgaatgaaaagcgactaagcgaggggtggcttccttgccctggtagcttgctcaaaatcataagc |
200 |
Q |
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| T |
28127447 |
tctaggtcctaatattatccttaaatttcttcgtatgaatgaaaagcgactaagcgaggggtggcttccttgccctggtagcttgctcaaaatcataagc |
28127546 |
T |
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| Q |
201 |
aatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccagctgggacagtgattgctgga |
300 |
Q |
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| T |
28127547 |
aatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccagctgggacagtgattgctgga |
28127646 |
T |
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| Q |
301 |
taccctccaattgccaacattggagaagcatcagagcctatggccaacactgcatccaattgattcttct |
370 |
Q |
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| T |
28127647 |
taccctccaattgccaacattggagaagcatcagagcctatggccaacactgcatccaattgattcttct |
28127716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 193 - 370
Target Start/End: Original strand, 28109013 - 28109190
Alignment:
| Q |
193 |
tcataagcaatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccagctgggacagtga |
292 |
Q |
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| T |
28109013 |
tcataagcaatctcaatcagttttggctcagttccctttaaccctccaaaacagatcccaaatggcattccttgcctatcataccctgctggtacagtga |
28109112 |
T |
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| Q |
293 |
ttgctggataccctccaattgccaacattggagaagcatcagagcctatggccaacactgcatccaattgattcttct |
370 |
Q |
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| T |
28109113 |
ttgcaggataccctccaattgacagcattgaagtagcatcagaacctatggccaacactgcatccaattgattcttct |
28109190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 34919653 - 34919780
Alignment:
| Q |
181 |
gcttgctcaaaatcataagcaatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccag |
280 |
Q |
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| T |
34919653 |
gcttgctcaaatgaataagcaatttcaatcaacttcggctctgagcctttcaaacctccaaaacaaattccaaatggcttacc---cttttcatatcctg |
34919749 |
T |
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| Q |
281 |
ctgggacagtgattgctggataccctccaat |
311 |
Q |
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| T |
34919750 |
ctggaacaatgattccaggataacctccaat |
34919780 |
T |
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