View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_high_40 (Length: 356)

Name: NF16688_high_40
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_high_40
NF16688_high_40
[»] scaffold0006 (4 HSPs)
scaffold0006 (13-338)||(130927-131249)
scaffold0006 (239-284)||(194825-194870)
scaffold0006 (236-284)||(125322-125370)
scaffold0006 (87-116)||(125448-125477)
[»] chr1 (3 HSPs)
chr1 (13-338)||(13602270-13602592)
chr1 (14-57)||(23833625-23833668)
chr1 (234-268)||(13487572-13487606)
[»] chr7 (2 HSPs)
chr7 (14-50)||(4800005-4800041)
chr7 (26-63)||(4800047-4800084)
[»] chr6 (2 HSPs)
chr6 (236-300)||(21770132-21770196)
chr6 (87-116)||(21770274-21770303)
[»] scaffold0291 (1 HSPs)
scaffold0291 (77-116)||(17805-17845)


Alignment Details
Target: scaffold0006 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 131249 - 130927
Alignment:
Q  13 cacagagagcgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  131249 cacagagagtgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa 131150  T
Q  113 tcatttagataagattgggagaaaaactgagaaaccgatcatcaatattgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  131149 tcatttagataagattgggagaaaaactgagaaaccgatcatcaat---gtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta 131053  T
Q  213 tatttgtcctgttgttgagttcttattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaagaacatggaagtag 312  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||    
T  131052 tatttgtcctgttgttcagttcttattgtcgcttttagcaggaagttatcattagcaggttctgcacaatgtgaaaaagtacaaaagaacatggaactag 130953  T
Q  313 tcaatttattgtttttctgaagaaga 338  Q
    ||||||||||||||||||||||||||    
T  130952 tcaatttattgtttttctgaagaaga 130927  T

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Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 194870 - 194825
Alignment:
Q  239 tgtcacttttagcaggaagttatcattagaaggttctgcacaatgt 284  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  194870 tgtcacttttagcaggaagttatcattagcaggttctgtacaatgt 194825  T

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Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 125370 - 125322
Alignment:
Q  236 tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgt 284  Q
    |||||||||||||||||||||||||||||||| ||||| || |||||||    
T  125370 tattgtcacttttagcaggaagttatcattagtaggttttgtacaatgt 125322  T

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Target: scaffold0006; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 125477 - 125448
Alignment:
Q  87 tttgtgagagtccataggttgtataatcat 116  Q
    ||||||||||||||||||||||||||||||    
T  125477 tttgtgagagtccataggttgtataatcat 125448  T

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Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 13602592 - 13602270
Alignment:
Q  13 cacagagagcgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602592 cacagagagtgaatacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataa 13602493  T
Q  113 tcatttagataagattgggagaaaaactgagaaaccgatcatcaatattgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602492 tcatttagataagattgggagaaaaactgagaaaccgatcatcaat---gtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattcccta 13602396  T
Q  213 tatttgtcctgttgttgagttcttattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaagaacatggaagtag 312  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||    
T  13602395 tatttgtcctgttgttcagttcttattgtcgcttttagcaggaagttatcattagcaggttctgcacaatgtgaaaaagtacaaaagaacatggaactag 13602296  T
Q  313 tcaatttattgtttttctgaagaaga 338  Q
    ||||||||||||||||||||||||||    
T  13602295 tcaatttattgtttttctgaagaaga 13602270  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 23833625 - 23833668
Alignment:
Q  14 acagagagcgaatacttgaaggttgtgttgagcaagggcaccta 57  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  23833625 acagagagtgaatacttgaaggttgtgttgagcaagggaaccta 23833668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 13487606 - 13487572
Alignment:
Q  234 cttattgtcacttttagcaggaagttatcattaga 268  Q
    |||||||||||||||| ||||||||||||||||||    
T  13487606 cttattgtcacttttaacaggaagttatcattaga 13487572  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 4800005 - 4800041
Alignment:
Q  14 acagagagcgaatacttgaaggttgtgttgagcaagg 50  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4800005 acagagagtgaatacttgaaggttgtgttgagcaagg 4800041  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 4800047 - 4800084
Alignment:
Q  26 tacttgaaggttgtgttgagcaagggcacctagtcagc 63  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  4800047 tacttgaaggttgtgttgagcaagggaacctaatcagc 4800084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 21770196 - 21770132
Alignment:
Q  236 tattgtcacttttagcaggaagttatcattagaaggttctgcacaatgtgagaaagtacaaaaga 300  Q
    |||| ||||| ||| ||||||||||||||||| |||||||| ||||||| | || ||||||||||    
T  21770196 tattctcactattaccaggaagttatcattagcaggttctgtacaatgtaaaaacgtacaaaaga 21770132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 21770303 - 21770274
Alignment:
Q  87 tttgtgagagtccataggttgtataatcat 116  Q
    ||||||||||||||||||||||||||||||    
T  21770303 tttgtgagagtccataggttgtataatcat 21770274  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 17805 - 17845
Alignment:
Q  77 gtgctcatagtttgt-gagagtccataggttgtataatcat 116  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  17805 gtgctcatagtttgttgacagtccataggttgtataatcat 17845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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