View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_43 (Length: 325)
Name: NF16688_high_43
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 41755058 - 41754764
Alignment:
| Q |
13 |
catcacaataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
112 |
Q |
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| T |
41755058 |
catcataataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
41754959 |
T |
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| Q |
113 |
gactaagaaatcatatggtgtatacgacaacaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
212 |
Q |
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| T |
41754958 |
gactaagaaatcatatggtgtatacgacaaca---gcaactctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
41754862 |
T |
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| Q |
213 |
ccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaagattcagtaatggtcgtgttcttaccgattatattggtaactatct |
310 |
Q |
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| T |
41754861 |
ccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgttggaagattcagtgatggtcgtgttcttaccgattatattggtaactatct |
41754764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 42 - 310
Target Start/End: Complemental strand, 41760936 - 41760674
Alignment:
| Q |
42 |
gtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagggactaagaaatcatatggtgtatacgaca |
141 |
Q |
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| T |
41760936 |
gtttattcatttttattggttttctattgtgtgacataaattaatgcaaattttacagaagtggtcgaagggactaagaaatcatatggtgtgtatgaca |
41760837 |
T |
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| Q |
142 |
acaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctcaccatcgtacaagcaaccttatggaatcac |
241 |
Q |
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| T |
41760836 |
aaaac------tctgtaaaattgtttgtatttggagactcatatgctgatacaggcaattttatgggctcaccatcgtacaagcaaccttatggaatcac |
41760743 |
T |
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| Q |
242 |
atttcctggtaaacctgctggaagattcagtaatggtcgtgttcttaccgattatattggtaactatct |
310 |
Q |
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| T |
41760742 |
atttcctggtaaacctgctggaagattcagtgatggtcgtgttcttaccgattacattggtaacaatct |
41760674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 41749311 - 41749211
Alignment:
| Q |
165 |
tttgtatttggagattcatatgctgacacaggaaattttgtgggctcaccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaa |
264 |
Q |
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| T |
41749311 |
tttgtatttggagactcatatgttgatacaggaaattactttacctcaccatcatataagcttccttatggaatcacttttcctggtaaaccttctggaa |
41749212 |
T |
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| Q |
265 |
g |
265 |
Q |
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| T |
41749211 |
g |
41749211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 42225971 - 42225933
Alignment:
| Q |
158 |
aaaattgtttgtatttggagattcatatgctgacacagg |
196 |
Q |
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| T |
42225971 |
aaaattgtttgtctttggagattcatatgcagacacagg |
42225933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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