View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_48 (Length: 302)
Name: NF16688_high_48
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 42965873 - 42965760
Alignment:
| Q |
11 |
catagggtgaggtaacatctattcacttgaatttttcttttnnnnnnntactgctaaataaatctagcataatttgaaaacatttactcatccgtaacta |
110 |
Q |
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| T |
42965873 |
cataggttgaggtaacatctattcacttcaatttttcttttaaaaaaatactgctaaat----ctaacataatttgaaaacatttactcatccgtaacta |
42965778 |
T |
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| Q |
111 |
aaaatcgttatcttgcat |
128 |
Q |
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|||||||||||||||||| |
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| T |
42965777 |
aaaatcgttatcttgcat |
42965760 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 42965683 - 42965588
Alignment:
| Q |
206 |
tgggttagagtatccattctatagcattcagtaagccaatnnnnnnnttggagataaacttacagaataacaattttaaaatttggaagactaattc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42965683 |
tgggttagagtatccattctatagcattcagtaagccaataaaaaa-ttggagataaacttacagaataacaattttaaaatttgaaagactaattc |
42965588 |
T |
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