View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_high_5 (Length: 679)

Name: NF16688_high_5
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_high_5
NF16688_high_5
[»] chr5 (1 HSPs)
chr5 (1-662)||(43016121-43016801)


Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Complemental strand, 43016801 - 43016121
Alignment:
Q  1 gtacaaaaaacagtttccagaggtgtcttggacttcttgtaagtgtggatttttctttggtaaatatagt---------------------aaaatgtgg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||    
T  43016801 gtacaaaaaacagtttccagaggtgtcttggacttcttgtaagtgtggatttttctttggtaaatatagtgtaaataaagctactaaaagtaaaatgtgg 43016702  T
Q  80 cacacatatggctgtttcaagataacaaaaacagattatctataataatgattttnnnnnnntagt-----tattttagccgaagcgtggcagagtgtgt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||     |||||||||| ||||||| ||||||||||    
T  43016701 cacacatatggctgtttcaagataacaaaaacagattatctataataatgattttaaaaaaatagtaacgttattttagcccaagcgtgacagagtgtgt 43016602  T
Q  175 tgagatatttagtttagttttcctacttttgttttcatgaaaatacggtttacatctatatacaacatcgaaaataagagaaaaaataaacatattaatt 274  Q
     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43016601 ggagatatttagtttagtttgcctacttttgttttcatgaaaatacggtttacatctatatacagcatcgaaaataagagaaaaaataaacatattaatt 43016502  T
Q  275 ccacttatttctctaaacgtgttgaatatatgattatgatcatgacattttgattgaaaagtcaataagttacaacataggattacttcaaagttcatac 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016501 ccacttatttctctaaacgtgttgaatatatgattatgatcatgacattttgattgaaaagtcaataagttacaacataggattacttcaaagttcatac 43016402  T
Q  375 gtaatggcattcatatgttgtacacctcatagatatagcattacggtaatgctatatacaaactattttcagtaacatctgataaataaataaatacaat 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    |||||||||||||||    
T  43016401 gtaatggcattcatatgttgtacacctcatagatatagcattacggtaatgctatatacaaactattttcagtaa---ctg----ataaataaatacaat 43016309  T
Q  475 acactatttgtacacctcataggtataaaattatgatcaagagtggaatctacaaaggaattcaataaaagccttcacgaaaactcatttgttaatttca 574  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016308 acactatttgtacacctcataggtatagaattatgatcaagagtggaatctacaaaggaattcaataaaagccttcacgaaaactcatttgttaatttca 43016209  T
Q  575 ttctatagcaatatagagccaaaataatgcttctggtcatttttcaatctgtgatgttgctgtgatgcaagatacatgtgatgtgact 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016208 ttctatagcaatatagagccaaaataatgcttctggtcatttttcaatctgtgatgttgctgtgatgcaagatacatgtgatgtgact 43016121  T

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