View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_57 (Length: 272)
Name: NF16688_high_57
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_57 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 7349435 - 7349682
Alignment:
| Q |
18 |
cctttatcatttttggggttagtacttgcatgtcgattacaatcatcgaagttgaacaggacttgattctgctatataatggtttagcacagtaatcttc |
117 |
Q |
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| T |
7349435 |
cctttatcatttttggggttagtacttgcatgtcgattacaatcatcgaagttgaacagaacttgattatgctatataatggtttagcacagtaatcttc |
7349534 |
T |
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| Q |
118 |
atatgcgttaatttttacttatacacatgcgnnnnnnnnnnnnnnnnnaataaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatac |
217 |
Q |
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| T |
7349535 |
atatgcgttaatttttacttatacacatgcg-----ttttttttttttaataaaaggaaggtatgcaactgcattcaaaatctaattaacattttcatac |
7349629 |
T |
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| Q |
218 |
atttttgagtaatattcaaattgtcaacgattaagaggaagctacctttgtta |
270 |
Q |
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| T |
7349630 |
atttttgagtaatattcaaattgtcaacgatgaagaggaagctacctttgtta |
7349682 |
T |
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Back To:
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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 270
Target Start/End: Complemental strand, 54934108 - 54933901
Alignment:
| Q |
55 |
tacaatcatcgaagttgaacaggacttgattctgctatataatggtttagcacagtaatcttcatatgcgttaatttttacttatacacatgcgnnnnnn |
154 |
Q |
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| T |
54934108 |
tacaatcatcaaaattgaacaagactttattctgctatatgatggtttagtacagtaatcttcatatgcgttaatttttacttatatacatg-------- |
54934017 |
T |
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| Q |
155 |
nnnnnnnnnnnaataaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagag |
254 |
Q |
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| T |
54934016 |
ttttttttttttataaaaggaaggtatgcaactgcaatcaaaatctcattcacattttcatacatttttgagtaatattccaattgtcaacgatgaagag |
54933917 |
T |
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| Q |
255 |
gaagctacctttgtta |
270 |
Q |
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| T |
54933916 |
gtagctacctttgtta |
54933901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 55 - 270
Target Start/End: Original strand, 24258930 - 24259137
Alignment:
| Q |
55 |
tacaatcatcgaagttgaacaggacttgattctgctatataatggtttagcacagtaatcttcatatgcgttaatttttacttatacacatgcgnnnnnn |
154 |
Q |
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||||||||||| | ||||||| ||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
24258930 |
tacaatcatcggaattgaacaagactttattctgctatatgatggtttattacattaatcttcatatgcgttaatttttacttatatacatg-------- |
24259021 |
T |
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| Q |
155 |
nnnnnnnnnnnaataaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagag |
254 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
24259022 |
ttttttttttttataaaaggaaggtatgcaactgcattcaaaatctcattcacattttcatacattttttagtaatattccaattgtcaacgatgaagag |
24259121 |
T |
|
| Q |
255 |
gaagctacctttgtta |
270 |
Q |
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| |||||||||||||| |
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| T |
24259122 |
gtagctacctttgtta |
24259137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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