View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_63 (Length: 258)
Name: NF16688_high_63
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_63 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 243
Target Start/End: Complemental strand, 13411933 - 13411751
Alignment:
| Q |
66 |
ttgtcacgtttctatattctatgaatcgaacttagctacatagattaagaaaaacataaaagtaacnnnnnnnnnngt-----gaagataagatgagcat |
160 |
Q |
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| T |
13411933 |
ttgtcatgtttctatattctatgaatcaaacttagctacatagattaagaaaaacataaaagtaattttttttttttttttttgaagataagatgagcat |
13411834 |
T |
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| Q |
161 |
tgtgtatactcaagcattcaactactctgaaggtggttcaatgaagaacacagaaatggattcaaaatttggttactcacaaa |
243 |
Q |
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| T |
13411833 |
tgtgtatactcaagcattcaactactctgaaggtggttcaatgaagaacacagaaatggattcaaaatttggttactcacaaa |
13411751 |
T |
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