View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_64 (Length: 255)
Name: NF16688_high_64
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_64 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 36263082 - 36262853
Alignment:
| Q |
11 |
caaaggcgatgtctctgtggagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggctcagtgtacacaaaggaagcacatat |
110 |
Q |
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| T |
36263082 |
caaaggcgatgtctctgtggagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggctcagtgtacacaaaggaagcacatat |
36262983 |
T |
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| Q |
111 |
cttgtttatgagtttgccgaaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggctctgacttggaagcaaagagttcaga |
210 |
Q |
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| T |
36262982 |
cttgtttatgagtttgccgaaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggctctgacttggaagcaaagagttcaga |
36262883 |
T |
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| Q |
211 |
ttgctcaggatgtggcggatgctttgaatt |
240 |
Q |
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| T |
36262882 |
ttgctcaggatgtggcggatgctttgaatt |
36262853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 36255770 - 36255555
Alignment:
| Q |
20 |
tgtctctgtggagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggctcagtgtacacaaaggaagcacatatcttgtttat |
119 |
Q |
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| T |
36255770 |
tgtctctacggagatgaacattctaaggagaattaaccacgccaacattacaaaactatctgggttttgtgtacacaaatgaaatacat--cttttctac |
36255673 |
T |
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| Q |
120 |
gagtttgccgaaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggctctgacttggaagcaaagagttcagattgctcagg |
219 |
Q |
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| T |
36255672 |
gagtttactgaaaacggttctcttgataattgt-ttcattttagcaagtgcttaaactctgtggctctaacttggaagcaaagagttcagattgctcaga |
36255574 |
T |
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| Q |
220 |
atgtggcggatgctttgaat |
239 |
Q |
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| T |
36255573 |
at-ttgctgatgctttgaat |
36255555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 37062069 - 37062134
Alignment:
| Q |
94 |
acaaaggaagcacatatcttgtttatgagtttgccgaaaatggttctcttgatgattggattcact |
159 |
Q |
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| T |
37062069 |
acaaaggtaacacttatcttgtttatgagtttgctgaaaataattctcttgatgattggcttcact |
37062134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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