View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_65 (Length: 254)
Name: NF16688_high_65
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_65 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 49484589 - 49484830
Alignment:
| Q |
13 |
atccatgaatatagaacttgctatccaatttgaaccctcatcataatagaatgttgatttctctttaatcattgtttctgcaaagtgttttggatcgttc |
112 |
Q |
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| T |
49484589 |
atccatgaatatagaacttgctatccaatttgaaccctcatcataatagaatgttgatttctctttaatcattgtttctgcaaagtgttttggatcgttc |
49484688 |
T |
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| Q |
113 |
tttcttgtgctttctccaatctcggagtagaaagccaatgcgttattaaccaatgtttgatcaataggctctcctgcttgtctccaatcgatctggatat |
212 |
Q |
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| T |
49484689 |
cttcttgtgctttctccaatctcggagtagaaagccaatgcgttattaaccaatgtttgatcaataggctctcctgcttgtctccaatcgatctggatat |
49484788 |
T |
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| Q |
213 |
cagaaaataaggatgaaagagatatcaaagcgaaaatcaaat |
254 |
Q |
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| T |
49484789 |
cagaaaataaggataaaagagatatcacagagaaaatcaaat |
49484830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 49701103 - 49701333
Alignment:
| Q |
27 |
aacttgctatccaatttgaaccctcatcata--atagaatgttgatttctctttaatcattgtttctgcaaagtgttttggatcgttctttcttgtgctt |
124 |
Q |
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| T |
49701103 |
aacttgctatccaatttgaagcctctacatagtatagaatgctgcatattctttagtcattgtttctgcaaagtgttttgggtcgttctttcttgtgctt |
49701202 |
T |
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| Q |
125 |
tctccaatctcggagtagaaagccaatgcgttattaaccaatgtttgatcaataggctctcctgcttgtctccaatcgatctggatatcagaaaataagg |
224 |
Q |
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| T |
49701203 |
tctccaatctcggagtagaaagccaatgcgttattaaccagtgtttgatcaataggctctcctgcgcgtttccgatcgatctggatatcggaaattaaag |
49701302 |
T |
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| Q |
225 |
at-gaaagagatatcaaagcgaaaatcaaat |
254 |
Q |
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| T |
49701303 |
ataaaaagagatattacagagaaaatcaaat |
49701333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 49531263 - 49531394
Alignment:
| Q |
58 |
atagaatgttgatttctctttaatcattgtttctgcaaagtgttttggatcgttctttcttgtgctttctccaatctcggagtagaaagccaatgcgtta |
157 |
Q |
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| T |
49531263 |
atagaatgttgcattttctttaatcgttgtttcagcaaagtgttttggatcgttttttcctgtgctttctccaatctctgagtagaaagtcagtgcatta |
49531362 |
T |
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| Q |
158 |
ttaaccaatgtttgatcaataggctctcctgc |
189 |
Q |
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| T |
49531363 |
tgaaccaaggtttcatcaataggctctcctgc |
49531394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 49528957 - 49529056
Alignment:
| Q |
87 |
tttctgcaaagtgttttggatcgttctttcttgtgctttctccaatctcggagtagaaagccaatgcgttattaaccaatgtttgatcaataggctctcc |
186 |
Q |
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| T |
49528957 |
tttctgcaaagtgttttggaacgttttttcctgtgctttctccaatctctgagtagaaagccaatgcattgttaaccagtgtttcatcaataggctctcc |
49529056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 49500076 - 49499984
Alignment:
| Q |
98 |
tgttttggatcgttctttcttgtgctttctccaatctcggagtag-aaagccaatgcgttattaaccaatgtttgatcaataggctctcctgc |
189 |
Q |
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| T |
49500076 |
tgttttggatcgatttttcttgtgctttctccaatctctgagtagaaaagtcaatgcattgttaaccaatgtttcatcaatagactctcctgc |
49499984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 49520370 - 49520485
Alignment:
| Q |
74 |
tctttaatcattgtttctgcaaagtgttttggatcgttctttcttgtgctttctccaatctcggagtagaaagccaatgcgttattaaccaatgtttgat |
173 |
Q |
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| T |
49520370 |
tctttaatgaatgtttccgcaaagtgttttggatcagtttttcctgttctatctccaatctctgagtagaaattcaatgcattgttaatcaatatttcat |
49520469 |
T |
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| Q |
174 |
caataggctctcctgc |
189 |
Q |
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| T |
49520470 |
caataggccctcctgc |
49520485 |
T |
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