View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_high_68 (Length: 251)
Name: NF16688_high_68
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_68 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 49485336 - 49485096
Alignment:
| Q |
11 |
aagaatatggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaacacttttcttaattttatt |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49485336 |
aagaaaatggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaacacttttcttaattttatt |
49485237 |
T |
|
| Q |
111 |
ttactttcccctattctaactctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49485236 |
ttactttcccctattctaactctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggt |
49485137 |
T |
|
| Q |
211 |
attttctgttttccatatttatattgttttattaacaattt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49485136 |
attttctgttttccatatttatattgttttattaacaattt |
49485096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 49701838 - 49701766
Alignment:
| Q |
19 |
ggggacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaa |
91 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
49701838 |
ggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaa |
49701766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 49701700 - 49701597
Alignment:
| Q |
129 |
actctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgcaatattggcaatggtattttctgttttccatat |
228 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||| || | | ||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
49701700 |
actctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgcaatattagcaatggtattttctgttttccattt |
49701601 |
T |
|
| Q |
229 |
ttat |
232 |
Q |
| |
|
|||| |
|
|
| T |
49701600 |
ttat |
49701597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 49532028 - 49531962
Alignment:
| Q |
22 |
gacttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattccttt |
88 |
Q |
| |
|
||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
49532028 |
gacttccttctcttgaagaaattggcttgttgtccttctatgacttggttggtgatgagatttcttt |
49531962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 55071093 - 55071154
Alignment:
| Q |
23 |
acttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattc |
84 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| || ||| ||||| |||||||||||| |
|
|
| T |
55071093 |
acttccttctcttgaagaaaccggcttcatatccttttaccacctggttagtgatgagattc |
55071154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 55066785 - 55066847
Alignment:
| Q |
25 |
ttccttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgagattcctt |
87 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||| || ||| ||||||||||||||||||||| |
|
|
| T |
55066785 |
ttccttctcttgaagaaaccagattcttatgcttttaccacctggttggtgatgagattcctt |
55066847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 49521025 - 49520984
Alignment:
| Q |
29 |
ttctcttgaagaaactggcttcttatccttctatcacttggt |
70 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
49521025 |
ttctcttgaagaaactgctttcttatccttctataacttggt |
49520984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 50240087 - 50240046
Alignment:
| Q |
160 |
ggtatatgatgaagtgaagaaacaagtaatggatgcaatatt |
201 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
50240087 |
ggtatatgatgaattaaataaacaagtaatggatgcaatatt |
50240046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 54150739 - 54150791
Alignment:
| Q |
29 |
ttctcttgaagaaactggcttcttatccttctatcacttggttggtgatgaga |
81 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
54150739 |
ttctcttgaagaaattggcttcttatccttttatgacttggttggtcatgaga |
54150791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University