View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_80 (Length: 224)
Name: NF16688_high_80
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_80 |
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| [»] scaffold0006 (4 HSPs) |
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| [»] scaffold0783 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 19153423 - 19153603
Alignment:
| Q |
17 |
agaccagaaacttacaacatcgaaaagatgttctttgagggttggtatagatgatggaatctgcctggtgaggtaaataacacaagggttgttaaaaata |
116 |
Q |
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| T |
19153423 |
agaccagaaacttacaacattgaagagatgttctttgagggttggtatagaagatggaatctgcctggtgaggtaatta-cacaagggtttttcaaaata |
19153521 |
T |
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| Q |
117 |
agaagcactaaaagagcaaggaatgggataaacttgttcgcaccttaagattaagaggtaaattcttgagtaggataatgaa |
198 |
Q |
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| T |
19153522 |
agaagcactaaaagagcaaggaatgggaaaaacttgttcgctccttaagattaagaggtaaattgttgagtaggataatgaa |
19153603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 13601886 - 13601816
Alignment:
| Q |
17 |
agaccagaaacttacaacatcgaaaagatgttctttgagggttggtatagatgatggaatctgcctggtga |
87 |
Q |
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| T |
13601886 |
agaccagaaacttacaacattgaaaagatgttctttgagggttggtatagatgatagaatctgcctggtga |
13601816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 13601814 - 13601754
Alignment:
| Q |
146 |
aaacttgttcgcaccttaagattaagaggtaaattcttgagtaggataatgaagcactttt |
206 |
Q |
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| T |
13601814 |
aaacttgttggctccttaagattaagaggtaaattcttgagtaggataatgaagcactttt |
13601754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 13626769 - 13626843
Alignment:
| Q |
129 |
agagcaaggaatgggataaacttgttcgcaccttaagattaagaggtaaattcttgagtaggataatgaagcact |
203 |
Q |
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| T |
13626769 |
agagcaaggaaaaggaaaaacttgttggctccttaagtttcagaagtaaattctttagtaggataatgaagcact |
13626843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 130543 - 130473
Alignment:
| Q |
17 |
agaccagaaacttacaacatcgaaaagatgttctttgagggttggtatagatgatggaatctgcctggtga |
87 |
Q |
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| T |
130543 |
agaccagaaacttacaacattgaaaagatgttctttgagggttggtatagatgatagaatctgcctggtga |
130473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 130471 - 130411
Alignment:
| Q |
146 |
aaacttgttcgcaccttaagattaagaggtaaattcttgagtaggataatgaagcactttt |
206 |
Q |
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| T |
130471 |
aaacttgttggctccttaagattaagaggtaaattcttgagtaggataatgaagcactttt |
130411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 81982 - 81914
Alignment:
| Q |
112 |
aaataagaagcactaaaagagcaaggaatgggataaacttgttcgcaccttaagattaagaggtaaatt |
180 |
Q |
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| T |
81982 |
aaataagaagcactaaaagagcatggaataggaaaaatctgttggctccttaagattaagagttaaatt |
81914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 79744 - 79844
Alignment:
| Q |
101 |
agggttgttaaaaataagaagcactaaaagagcaaggaatgggataaacttgttcgcaccttaagattaagaggtaaattcttgagtaggataatgaagc |
200 |
Q |
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| T |
79744 |
agggtttttcaaaataagaagtgcaaatagagaaaggaatagaaaaaacttattggctccttaagtttaagatttaaattctagagtaggataatgaagc |
79843 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
79844 |
a |
79844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0783 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0783
Description:
Target: scaffold0783; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 5306 - 5406
Alignment:
| Q |
101 |
agggttgttaaaaataagaagcactaaaagagcaaggaatgggataaacttgttcgcaccttaagattaagaggtaaattcttgagtaggataatgaagc |
200 |
Q |
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| T |
5306 |
agggtttttcaaaataagaagtgcaaatagagaaaggaatggaaaaaacttattggctccttaagtttaagatttaaattctagagtaggataatgaagc |
5405 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
5406 |
a |
5406 |
T |
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