View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_81 (Length: 224)
Name: NF16688_high_81
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_81 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 30459428 - 30459277
Alignment:
| Q |
1 |
cttaaatctt-attagtataatttctcaacattagatcttctatgcatattttgttcttattgtgcttaaacatttggccaaccttggattttattccct |
99 |
Q |
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| T |
30459428 |
cttaaatctttattagtataatttctcaatattagatcttctatgcatattttgttcttattgtgcttcaacatttgggcaaccttggattttattccct |
30459329 |
T |
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| Q |
100 |
tggttcnnnnnnnnnataaattttcctcccttgcaacttgacatccctttaaaacta |
156 |
Q |
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| T |
30459328 |
tgatt-----ttttctttaattttcctcccttgcaacttgacatccctttaaaacta |
30459277 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 30458899 - 30458851
Alignment:
| Q |
148 |
ttaaaactattatgagatcaccatatcacttaccaaaagctaaagtcaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30458899 |
ttaaaactattatgagatcaccatatcacttaccaaaagctaaagtcaa |
30458851 |
T |
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