View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_85 (Length: 220)
Name: NF16688_high_85
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_85 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 42972783 - 42972596
Alignment:
| Q |
14 |
cacagaatcaaacaaactaatagatataacgaaacacnnnnnnnntgaataaaactttgaaacctcacctcaccgggatggagaatagttttaaccttct |
113 |
Q |
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| T |
42972783 |
cacagaatcaaacaaagtaatagatataacgaaacagaaaataaatgaataaaacttggaaacctcacctcaccgggatgaagaatagttttaaccttct |
42972684 |
T |
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| Q |
114 |
taacaaacggagaacgcgcctcttcattaaacatagcaatatgttcagcagcagcaaccctaggtttaacaatttcacaagtagcaat |
201 |
Q |
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| T |
42972683 |
taacaaatggagaacgcgcctcttcattaaacatagcaatatgttcagcagcagcaaccctaggtttaacaatttcacaagtagcaat |
42972596 |
T |
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