View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_high_88 (Length: 211)
Name: NF16688_high_88
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_88 |
 | |
|
| [»] scaffold0536 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 48965748 - 48965567
Alignment:
| Q |
12 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48965748 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagc |
48965649 |
T |
|
| Q |
112 |
ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattc |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48965648 |
ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattc |
48965567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 48912106 - 48912279
Alignment:
| Q |
16 |
gagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctct |
115 |
Q |
| |
|
||||| ||| ||||||||| ||||| ||||| ||||||||||||||||| || ||||| | | ||||||| ||| |||||||| |||||||||||| | |
|
|
| T |
48912106 |
gagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaat |
48912205 |
T |
|
| Q |
116 |
gtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggtt |
189 |
Q |
| |
|
||| || | ||||||||| ||||||||||||||||| | || ||||||||| |||| || || ||||||||| |
|
|
| T |
48912206 |
gtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggtt |
48912279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 48958522 - 48958389
Alignment:
| Q |
56 |
tgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctg-tcgttatcaggataaacagctttatgagattgcgtgtg |
154 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||| | || | ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
48958522 |
tgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatc-tgataaacaactttatgagattgcgtgtg |
48958424 |
T |
|
| Q |
155 |
caatagaagcatcgggtcatgattttatatgggtt |
189 |
Q |
| |
|
||||||||||| ||||| || ||| |||||||| |
|
|
| T |
48958423 |
ggatagaagcatcaggtcacgaatttgtatgggtt |
48958389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 48962713 - 48962627
Alignment:
| Q |
12 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacat |
98 |
Q |
| |
|
|||||| |||||||| ||||||| ||| |||| ||||||||| || | ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
48962713 |
agcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctgtggtggcttaattcaaagcgacataactcagtgttgtacat |
48962627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 6268 - 6429
Alignment:
| Q |
12 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagc |
111 |
Q |
| |
|
|||| ||||||||||| | |||| ||||| ||||| |||||| |||||||||| | ||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
6268 |
agcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc |
6367 |
T |
|
| Q |
112 |
ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca |
173 |
Q |
| |
|
| || | || | ||||||||| ||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
6368 |
ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtca |
6429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 10254 - 10390
Alignment:
| Q |
14 |
cagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcct |
113 |
Q |
| |
|
||||||| ||| || |||||| ||||| ||||| |||||| |||||||||| || | ||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
10254 |
cagagagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcct |
10351 |
T |
|
| Q |
114 |
ctgtcgttatcaggataaacagctttatgagattgcgtg |
152 |
Q |
| |
|
||| || | |||||||| ||||||||||||||||| |
|
|
| T |
10352 |
atgttatttttcagataaacaactttatgagattgcgtg |
10390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 12589926 - 12590107
Alignment:
| Q |
12 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagc |
111 |
Q |
| |
|
|||||| |||||| | ||||||| |||| ||||||||||||| |||||||||| || ||||||||| ||||||| |||||||||||| ||||||| ||| |
|
|
| T |
12589926 |
agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc |
12590025 |
T |
|
| Q |
112 |
ctctg-tcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattc |
193 |
Q |
| |
|
| || | || ||| |||||||| |||||||||||| |||||| ||||||||||| || || || || |||||||||||| |
|
|
| T |
12590026 |
atatgctatttctca-gataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattc |
12590107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 12483222 - 12483322
Alignment:
| Q |
13 |
gcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcc |
112 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||| |||||| |||||||| || || |||| | | || ||||||||||||||| ||||||| |||| |
|
|
| T |
12483222 |
gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc |
12483321 |
T |
|
| Q |
113 |
t |
113 |
Q |
| |
|
| |
|
|
| T |
12483322 |
t |
12483322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University