View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_high_90 (Length: 206)
Name: NF16688_high_90
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_high_90 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 12618249 - 12618044
Alignment:
| Q |
1 |
cctccaccttctccttctccctttgaattccctgatgaagattcaagtccaaattcttctcctcttgtcattgcaatcattggaatcttagcaagtgctt |
100 |
Q |
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| T |
12618249 |
cctccaccttctccttctccctttgaattccctgatgaagattcaagtccaaatttttctcctcttgtcattgcaatcattggaatcttagcaagtgctt |
12618150 |
T |
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| Q |
101 |
ttcttcttgtaacttactacaccataatatcaaagtattgtggtcgcagagaatcatcggcaagtgaatcgcgtgaagcaatcgatgaatttgaagacga |
200 |
Q |
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| T |
12618149 |
ttcttcttgtaacttactacaccataatatcaaagtattgtggtcgcagagaatcatcggcgagtgaatcgcgtgaagcaaacgatgaatttgaagacga |
12618050 |
T |
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| Q |
201 |
ccatca |
206 |
Q |
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|||||| |
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| T |
12618049 |
ccatca |
12618044 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 27772005 - 27771880
Alignment:
| Q |
30 |
ccctgatgaagattcaagtccaaattcttctcctcttgtcattgcaatcattggaatcttagcaagtgcttttcttcttgtaacttactacaccataata |
129 |
Q |
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||||||||| ||||||| ||| ||| |||||||||||| |||||||| | ||| | ||||| | ||||||| | || ||||||| ||||| ||||| |
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| T |
27772005 |
ccctgatgatgattcaaaaccatatttttctcctcttgttattgcaattttgggagttttagccactgcttttttactactaacttattacactctaata |
27771906 |
T |
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| Q |
130 |
tcaaagtattgtggtcgcagagaatc |
155 |
Q |
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| T |
27771905 |
tccaaatattgtggtcacagagaatc |
27771880 |
T |
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