View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_10 (Length: 591)
Name: NF16688_low_10
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_10 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 36971628 - 36972218
Alignment:
| Q |
1 |
acttcggtatgcactttccttcctaactttcttttacatgactttcaactagaagcaaaacattcaagggagctcctttgtcaaataatatttatgtttt |
100 |
Q |
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| T |
36971628 |
acttcagtatgcacttttcttcctaactttcttttacatgattttcaaatagaagcaaaacattcaagggagctcctttgtcaaataatatttatgtttt |
36971727 |
T |
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| Q |
101 |
tgttctgtacactgtaagctttggctagaagaaattgtgaaacttctagctaatttttgtcatttattcttctactaatatttctgaattctcagttgat |
200 |
Q |
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| T |
36971728 |
tgttctgtacactgtaaactttggctagaagaaattgtgaaacttctagctaacttttgtcatttattcttctactaatatttctgaattctcagttgat |
36971827 |
T |
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| Q |
201 |
ggttcgcactgttgttggggaggagttgatgcctcaaaggaatagtcaatcacagatttagagtggagtacctgcagaaattggtggattagttgaagat |
300 |
Q |
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| T |
36971828 |
ggttcgcactgttgttggggaggagttgatgcctcaaaggaatagtcaatcacagatttagagtggagtacctgcagaaattggtggattagttgaagat |
36971927 |
T |
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| Q |
301 |
tgaatttatcgtattattctattgtacaaatttatgatgtacagagtacagacattctgcacgagtttattatggtttaccaattttgttttgtcccctc |
400 |
Q |
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| T |
36971928 |
tgaatttatcgtattattctattgtacaaatttatgatgtacagagtacagacattctgcacgagtttattatggtttaccaattttgttttgtcccctc |
36972027 |
T |
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| Q |
401 |
attgtctagaatacaaacttaattctagctttagtagttaatgctgtcaaagaacagatgatggcacaattgctactaatttttataggtttctcaaatg |
500 |
Q |
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| T |
36972028 |
attgtctagaatacaaactcaattctagctttagtagttaatgctgtcaaagaacagatgatggcacaattgctactaatttttataggtttctcaaatg |
36972127 |
T |
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| Q |
501 |
cccgtgtctgaaaatggatggtggtggtgggtgcatctgattattagtgatgatgatggtgatacgtttattctgatattatgtgtgcctt |
591 |
Q |
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| T |
36972128 |
cccgtgtctgaaaatggatggtggtggtgggtgcatctgattattagtgatgatgatggtgatacgtttattctgatattatgtgtgcctt |
36972218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 591
Target Start/End: Complemental strand, 33974389 - 33974332
Alignment:
| Q |
536 |
tctgattattagtgatgatgatggtgatacgtttat--tctgatattatgtgtgcctt |
591 |
Q |
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| T |
33974389 |
tctgattattagtgatgatggtggagatgcgtttattctctgatattatgtgtgcctt |
33974332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 33974435 - 33974401
Alignment:
| Q |
132 |
aaattgtgaaacttctagctaatttttgtcattta |
166 |
Q |
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| T |
33974435 |
aaattgtgaaacttctagctaatttttgtcattta |
33974401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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