View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_12 (Length: 559)
Name: NF16688_low_12
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 37168877 - 37169439
Alignment:
| Q |
1 |
atcattactaactgtgtctctgcttctatagacattatattgtcattcatcatcaatattttcattccacgaacactatgtgagggccattgataaacat |
100 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
37168877 |
atcattattaactgtgtctctgcttctatagatattatattgtcattcatcatcaatattttcattctacgaacactatgtgagggccattaataaacat |
37168976 |
T |
|
| Q |
101 |
gtcgtcaaagtaaacatgttttcacacattatactattattgatcctaactttatgcttctccannnnnnnctttcaacaatcctcaaagtaaacatgtc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
37168977 |
gtcgtcaaagtaaacatgttttcacacattata---ttattgatcctaactttatgcttctcctttttttt-ttccaacaatcctcaaagtaaacatgtc |
37169072 |
T |
|
| Q |
201 |
gtcaaggataaagcaaagctaacttgatcaacc---ttacacaatcttctttgtttggccattaataaacactagcagatgcatgaaaaattactagcag |
297 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37169073 |
gtcaaggataaagcaaagctaacttgatcaaccaccttacacaatcttctttgtttggccattaataaacactagcagatgcataaaaaattactagcag |
37169172 |
T |
|
| Q |
298 |
gattgaccgttgaatagttgacttactaaacctttttacagaggcgtttcagtcattatagacaatccctatctcagcctg---------------caaa |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37169173 |
gattgaccgttgaatagttgacttactaaacctttttacagaggcgtttcagtcattatagacaatccctatctcagcctgcaaaaaaaataaatacaaa |
37169272 |
T |
|
| Q |
383 |
aaacataaaaagcttcacacaccacagtctgtatcacaggctcatgagagtaacctacccagtaatttgtcaaagcttgagctatgcttcaaagaaacct |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169273 |
aaacataaaaagcttcacacaccacagtctgtatcacacgctcatgagagtaacctacccagtaatttgtcaaagcttgagctatgcttcaaagaaacct |
37169372 |
T |
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| Q |
483 |
ttgccacgtgacaaactttcccttcctcaattcgtcacacccctccagggtccctgccctatgctac |
549 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37169373 |
ttgccacgtgacaaactttcccttcctcaattcgtcacacccctccagggtccctgccctatactac |
37169439 |
T |
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