View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_13 (Length: 496)
Name: NF16688_low_13
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Complemental strand, 6348426 - 6347949
Alignment:
| Q |
9 |
gaagaaaatggagggaacatcaatattaaaaagactaagatcctatttataaatgttgtgatttctctagagtttgttatcaattataactaacgcacaa |
108 |
Q |
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| T |
6348426 |
gaagaaaatggagggaacatcaatattaaaaagactaagatcctatttataaatgttgtgatttctctagagtttgttatcaattataactaacgcacaa |
6348327 |
T |
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| Q |
109 |
aaccgttatcaactaacttgtattacaagcaacacttctattctttcttgtccttacaattaaaatccccctcaagttagaatgtatgtcaatcattcat |
208 |
Q |
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| T |
6348326 |
aaccgttatcaactaacttgtattacaagcaacacttctattctttcttgtccttacgattaaaacccccctcaagttagaatgtatgtcaatcattcat |
6348227 |
T |
|
| Q |
209 |
agcttgtaatgcaaggtgttgaaggtcctagatgcaattactttgtcaatatg-----tctccaacttgttccttagatgatattggaggtaaaagcaaa |
303 |
Q |
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| T |
6348226 |
agcttgtaatgcaaggtgttgaaggtcctagatgcaattactttgtcaatatgtctcgtctccaacttgttccttagatgatattggaggtaaaagcaaa |
6348127 |
T |
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| Q |
304 |
attcctgcttgcactttgttacgaaccacatgacagtcaatttcaagat-gctttgttcttttaagaaagacataatttgttgctatatacaatgatgac |
402 |
Q |
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| T |
6348126 |
attcctacttgcactttgttacgaaccacatgacagtcaatttcaagatacctttattcttttaagaaagacataatttgttgctatatacaatgatgac |
6348027 |
T |
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| Q |
403 |
ttgttcttatagtagatgatgatgggtgattgatgtggaacaagaaaatcatatagtaggtacaataaccacaagttg |
480 |
Q |
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| T |
6348026 |
ttgttcttagagtagatgatgatgggtgattgatgtggaacaagaaaatcatatagtaggtacaataaccacaagttg |
6347949 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 18962675 - 18962719
Alignment:
| Q |
327 |
aaccacatgacagtcaatttcaagatgctttgttcttttaagaaa |
371 |
Q |
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| T |
18962675 |
aaccaaatgacagtcaatctcaagatgctttgtccttttatgaaa |
18962719 |
T |
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