View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_15 (Length: 468)
Name: NF16688_low_15
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 36551664 - 36552095
Alignment:
| Q |
20 |
agggacataaacacaccattatatagcaatgttaatgtgtgatgtttggtgatgatacgtaccaagtaatgtaagatttaaagagtgtaatacggagaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36551664 |
agggacataaacacaccattatatagcaatgttaatgtgtgatgtttggtgatgatacgtaccaagtaatgtaagatttaaagagtgtaatacggagaag |
36551763 |
T |
|
| Q |
120 |
aaaatttattgcctttaatggcaatttcaactttagctaggctgcagaagtggggtttcgtagaaattaaaatactgttggtgggcatgtgcacaaatgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36551764 |
aaaatttattgcctttaatggcaatttcaactttagctaggctgcagaagtggggttttgtagaaattaaaatactgttggtgggcatgtgcacaaatgc |
36551863 |
T |
|
| Q |
220 |
attgtttaattaatattggtctattcttgtcgttaaatattgacctcattttgtatactagattattggcctcgttaggtagggagagataacagaatat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36551864 |
attgtttaattaatattggtctattcttgtcgttaaatattgacctcattttggatactagattattggcctcgttaggtagggagagataacagaatat |
36551963 |
T |
|
| Q |
320 |
aaacgtggttaaaaataatgtgaaaaataagtgtatgtaattatgtataacttcaaaagtttatctaatggtaaaaaacgatatgaaggtttcgtgtttg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36551964 |
aaacgtggttaaaaataatgtgaaaaataagtgtatgtaattatgtataacttcaaaagtttatctaatggtaaaaaacgatatgaaggttccgtgtttg |
36552063 |
T |
|
| Q |
420 |
agctttcattgatgttctagtggaagaaaatg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36552064 |
agctttcattgatgttctagtggaagaaaatg |
36552095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 36549002 - 36549167
Alignment:
| Q |
48 |
atgttaatgtgtgatgtttggtgatgatacgtaccaagtaatgtaagatttaaagagtgtaatacggagaagaaaatttattgcctttaatggcaatttc |
147 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
36549002 |
atgttaatgtgtgaatgttggcgatgatacgtaccaagtaatagaggatt-aaagagtgtaatacggagaagaaa-tttattgcctttaatggtaatttc |
36549099 |
T |
|
| Q |
148 |
aactttagctaggctgcagaagtggggtttcgtagaaattaaaatactgttggtgggcatgtgcacaaa |
216 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
36549100 |
aactttagctatgcttcagaagtggggttttgtagaaattaaaa-attgttgtttagcatgtgcacaaa |
36549167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University