View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_19 (Length: 439)
Name: NF16688_low_19
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 47634572 - 47634151
Alignment:
| Q |
18 |
gaacagaaatagaaggttgaaggaattcaaagacatagtgtaattcatggttctgcttattgtgttaatggatgaagtgttgtatatattattgtttgtg |
117 |
Q |
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| T |
47634572 |
gaacagaaatagaaggttgaaggaattcaaagacatagtgtaattcatggctctgtttattgtgttaagggatgaagtgttgtatatattattgtttgtg |
47634473 |
T |
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| Q |
118 |
aaatctaagtttgcttaagacatcatttgttgcaagttaaaaatgaagttgcaagtcaagtcaagtcaaccttgttttgttgttgttatgatgcatttta |
217 |
Q |
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| T |
47634472 |
aaatctaagtttgcttaagacatcatttgttgcaagttaaaaatgaagttgcaagtcaagtcaagtcaaccttgttttgttgttgttatgatgcatttta |
47634373 |
T |
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| Q |
218 |
gtccttgtcattctgttttctttgaaattcatcgtctaggaaaaatcttgtttgtttatctattgctggtcgtgtttgttactctatgttgaaattgtat |
317 |
Q |
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| T |
47634372 |
gtccttgtcattctgttttctttgaaattcatcctctaggaaaaatcttgtttgtttatctattgctggacgtgtttattactctatgttgaaattgtat |
47634273 |
T |
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| Q |
318 |
aagacgtcgtagaatggaaaaaggaaaggtcaagagagtgatgtaagactgtgaggacatggaaatttaaggattgctgaagtgaccacgattcccctga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47634272 |
aagacgtcgtagaatggaaaaaggaaaggtcaagagagtgatgtaagactgtgaggacatggaaatttaaggattgctgaagtgaccacgattcccctga |
47634173 |
T |
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| Q |
418 |
gaatgggttgaataagtataat |
439 |
Q |
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| T |
47634172 |
gaatgggttgaataagtctaat |
47634151 |
T |
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