View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_20 (Length: 435)

Name: NF16688_low_20
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_20
NF16688_low_20
[»] chr1 (10 HSPs)
chr1 (27-343)||(30190674-30190990)
chr1 (75-342)||(31991546-31991822)
chr1 (130-242)||(19337675-19337786)
chr1 (264-342)||(16306190-16306268)
chr1 (264-336)||(19337569-19337641)
chr1 (164-251)||(41404116-41404203)
chr1 (165-251)||(42117145-42117231)
chr1 (164-204)||(35306753-35306793)
chr1 (306-342)||(35306905-35306941)
chr1 (298-342)||(48046404-48046448)
[»] chr5 (8 HSPs)
chr5 (12-344)||(13191572-13191914)
chr5 (265-344)||(8961591-8961670)
chr5 (265-344)||(30699461-30699540)
chr5 (164-241)||(4943585-4943662)
chr5 (265-342)||(32025875-32025952)
chr5 (299-344)||(41483504-41483549)
chr5 (298-344)||(11617179-11617225)
chr5 (165-251)||(32233051-32233137)
[»] chr8 (7 HSPs)
chr8 (12-342)||(22535826-22536166)
chr8 (17-339)||(25993752-25994084)
chr8 (12-342)||(22531141-22531481)
chr8 (265-343)||(15820026-15820104)
chr8 (264-341)||(24944938-24945015)
chr8 (265-336)||(27325011-27325082)
chr8 (264-344)||(11354713-11354793)
[»] scaffold0097 (1 HSPs)
scaffold0097 (12-342)||(21278-21618)
[»] chr3 (11 HSPs)
chr3 (12-344)||(20983184-20983515)
chr3 (12-344)||(49368220-49368566)
chr3 (164-241)||(42029279-42029356)
chr3 (267-344)||(32278313-32278390)
chr3 (165-251)||(14567892-14567978)
chr3 (292-344)||(25045312-25045364)
chr3 (161-241)||(27011239-27011319)
chr3 (298-353)||(39439998-39440053)
chr3 (164-219)||(40024844-40024899)
chr3 (306-344)||(35231961-35231999)
chr3 (163-212)||(11456639-11456688)
[»] chr2 (5 HSPs)
chr2 (12-342)||(20717441-20717781)
chr2 (164-241)||(28219076-28219153)
chr2 (298-347)||(6476763-6476812)
chr2 (267-340)||(28199321-28199393)
chr2 (164-241)||(44246389-44246466)
[»] chr6 (3 HSPs)
chr6 (12-342)||(33091082-33091423)
chr6 (265-349)||(3639047-3639131)
chr6 (341-382)||(4289985-4290026)
[»] chr7 (5 HSPs)
chr7 (20-342)||(7237694-7238033)
chr7 (184-293)||(23113833-23113951)
chr7 (105-153)||(23113961-23114009)
chr7 (164-241)||(23417210-23417287)
chr7 (267-339)||(19625367-19625439)
[»] chr4 (7 HSPs)
chr4 (341-392)||(32651072-32651123)
chr4 (265-344)||(34495112-34495191)
chr4 (164-251)||(41809886-41809973)
chr4 (161-241)||(21263574-21263654)
chr4 (267-342)||(35033924-35033999)
chr4 (165-251)||(26861354-26861440)
chr4 (298-342)||(21263721-21263765)
[»] scaffold0402 (2 HSPs)
scaffold0402 (130-242)||(737-848)
scaffold0402 (264-333)||(634-703)
[»] scaffold0039 (1 HSPs)
scaffold0039 (164-241)||(56974-57051)
[»] scaffold0127 (1 HSPs)
scaffold0127 (164-251)||(30132-30219)
[»] scaffold0022 (2 HSPs)
scaffold0022 (298-344)||(44257-44303)
scaffold0022 (298-344)||(77978-78024)
[»] scaffold0110 (1 HSPs)
scaffold0110 (164-241)||(38567-38644)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 27 - 343
Target Start/End: Original strand, 30190674 - 30190990
Alignment:
Q  27 agtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagaggaagaggcaaataaa 126  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190674 agtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagaggaagaggcaaataaa 30190773  T
Q  127 aggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30190774 aggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaa 30190873  T
Q  227 tggaattggttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcattccattccattccactacaacccatc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190874 tggaattggttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcattccattccattccactacaacccatc 30190973  T
Q  327 aatccaaacatagccta 343  Q
    |||||||||||||||||    
T  30190974 aatccaaacatagccta 30190990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 75 - 342
Target Start/End: Original strand, 31991546 - 31991822
Alignment:
Q  75 gagaaaagaacgtgttgaaaattgtgattgagtagaggaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattgg 174  Q
    |||||||| |||||| | ||||| |  |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| || |||||||||||    
T  31991546 gagaaaaggacgtgtgggaaattatatttgagtagaggaagagacaaataaaatgagggtagaatagtaatatttcaagacacaagttccattccattgg 31991645  T
Q  175 atacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattg----------gttccattccattccatgtacatcccatca 264  Q
    ||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||          ||||||||||||||||| |||||| |||||    
T  31991646 atacc-cccaaattggggggaatgaggaattgaaggaatgagtggtatagaatggaattgattccattgtgttccattccattccatttacatctcatca 31991744  T
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcct 342  Q
    ||||||||||||||||||||| | ||  |||  ||||||||||||||||||||||||||||||||||||||| |||||    
T  31991745 atccaaacaatggaattttataaaatgacattacattccattccattccactacaacccatcaatccaaacagagcct 31991822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 19337786 - 19337675
Alignment:
Q  130 agggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatgg 229  Q
    |||||| ||| |||| |||||||||  || |||||||||||||| ||||  |||||||| ||| || ||| ||||||||||||||||||||||| |||||    
T  19337786 agggtaaaatggtaatatttcaagattcatatttcattccattg-atacaccccaaattagggggattgaaaaattgaaggattgagtggtatataatgg 19337688  T
Q  230 aattggttccatt 242  Q
     |||| |||||||    
T  19337687 cattgattccatt 19337675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 16306190 - 16306268
Alignment:
Q  264 aatccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||||| | ||||||||||||   ||| |||||||||||||| |||  ||||||||||||||| |||||    
T  16306190 aatccaaacaatggaactctattatataccactccatcccattccattccaccacatgccatcaatccaaacaaagcct 16306268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 19337641 - 19337569
Alignment:
Q  264 aatccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaaca 336  Q
    ||||||||||||| |||||  |||||||||||   |||||| |||||||||| ||| ||||||||||||||||    
T  19337641 aatccaaacaatgaaatttacttatataccattcaattccactccattccaccacatcccatcaatccaaaca 19337569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 41404203 - 41404116
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattccattccat 251  Q
    |||| ||||||||||  |||||||||||| |||||  |||||| | || |||||||||||  ||||||| ||||||||  ||||||||    
T  41404203 catttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttccatcacattccat 41404116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 42117145 - 42117231
Alignment:
Q  165 attccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattccattccat 251  Q
    ||||||||||||||  ||||| |||| | |||||| |||||||||| ||| ||||||| | |||||||  ||||||||  |||||||    
T  42117145 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccat 42117231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 35306753 - 35306793
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaat 204  Q
    |||||||||| |||||||||||||||||| |||||| ||||    
T  35306753 cattccattgcatacctcccaaattggggggaatgaaaaat 35306793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 35306905 - 35306941
Alignment:
Q  306 tccattccactacaacccatcaatccaaacatagcct 342  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  35306905 tccattccattacaatccatcaatccaaacatagcct 35306941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 48046448 - 48046404
Alignment:
Q  298 cattccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||||||| ||   |||||||||||||||||||||    
T  48046448 cattccattccattccaccactctccatcaatccaaacatagcct 48046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 13191572 - 13191914
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13191572 gagaagaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 13191671  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13191672 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaagga 13191771  T
Q  212 ttgagtggtatagaatggaattgg----------ttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 301  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13191772 ttgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 13191871  T
Q  302 ccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13191872 ccattccattccactacaacccatcaatccaaacatagcctaa 13191914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 8961670 - 8961591
Alignment:
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    ||||||||||||||| | ||||||||||||   ||| |||||||||||||| |||  ||||||||||||||| |||||||    
T  8961670 atccaaacaatggaactctattatataccactccatcccattccattccaccacatgccatcaatccaaacaaagcctaa 8961591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 30699540 - 30699461
Alignment:
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    ||||||||||||||| | ||||||||||||   ||| |||||||||||||| |||  ||||||||||||||| |||||||    
T  30699540 atccaaacaatggaactctattatataccactccatcccattccattccaccacatgccatcaatccaaacaaagcctaa 30699461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 4943662 - 4943585
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    |||||||||||| ||  |||||||||||  |||||  ||||||||||| |||||||||| | ||||||| ||||||||    
T  4943662 cattccattggaaacaccccaaattgggtggaatggaaaattgaaggaatgagtggtattggatggaatgggttccat 4943585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 32025952 - 32025875
Alignment:
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||||||||| | ||| | || ||||||||||||||||||  |||   ||||||||||||| ||||||    
T  32025952 atccaaacaatggaattttaatttattcaatttcattccattccattccatcacatatcatcaatccaaacttagcct 32025875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 41483549 - 41483504
Alignment:
Q  299 attccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||    
T  41483549 attccattccattccaccacattccatcaatccaaacatagcctaa 41483504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 11617225 - 11617179
Alignment:
Q  298 cattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||    
T  11617225 cattccattccattccaccactctccatcaatccaaacatagcctaa 11617179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 32233137 - 32233051
Alignment:
Q  165 attccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattccattccat 251  Q
    ||||||||||||||  ||||| |||| | |||||| |||||||||| ||| ||||||| | |||||||  ||||||||  |||||||    
T  32233137 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccat 32233051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 22535826 - 22536166
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22535826 gagaagaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 22535925  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22535926 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaagga 22536025  T
Q  212 ttgagtggtatagaatggaattgg----------ttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 301  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22536026 ttgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 22536125  T
Q  302 ccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22536126 ccattccattccactacaacccatcaatccaaacatagcct 22536166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 25993752 - 25994084
Alignment:
Q  17 gaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagaggaaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25993752 gaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagaggaaga 25993851  T
Q  117 ggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaaggattgag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25993852 ggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaaggattgag 25993951  T
Q  217 tggtatagaatggaattgg----------ttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcattccatt 306  Q
    |||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25993952 tggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcattccatt 25994051  T
Q  307 ccattccactacaacccatcaatccaaacatag 339  Q
    |||||||||||||||||||||||||||||||||    
T  25994052 ccattccactacaacccatcaatccaaacatag 25994084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 22531141 - 22531481
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  22531141 gagaagaagaaaagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgtttaaaattgtgattgagtagag 22531240  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22531241 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaagga 22531340  T
Q  212 ttgagtggtatagaatggaattgg----------ttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 301  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22531341 ttgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 22531440  T
Q  302 ccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22531441 ccattccattccactacaacccatcaatccaaacatagcct 22531481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 15820104 - 15820026
Alignment:
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagccta 343  Q
    ||||||||||||||| | ||||||||||||   ||| |||||||||||||| | |  ||||||||||||||| ||||||    
T  15820104 atccaaacaatggaactctattatataccactccatcccattccattccaccatatgccatcaatccaaacaaagccta 15820026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 24945015 - 24944938
Alignment:
Q  264 aatccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcc 341  Q
    ||||||||||||||||| | ||||| |||||   |||||||||||||||||  |||  ||| ||||||||||||||||    
T  24945015 aatccaaacaatggaatataattatgtaccactccattccattccattccatcacataccaccaatccaaacatagcc 24944938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 27325082 - 27325011
Alignment:
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaaca 336  Q
    |||||||||||| || | ||||||||||||   ||| |||||||||||||| |||  |||||||||||||||    
T  27325082 atccaaacaatgaaactctattatataccactccatcccattccattccaccacatgccatcaatccaaaca 27325011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 11354793 - 11354713
Alignment:
Q  264 aatccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    ||||||||||||||||| | ||||| |||||   |||||| ||||||||||  |||   || |||||||||||||||||||    
T  11354793 aatccaaacaatggaatataattatgtaccactccattccgttccattccatcacatatcaccaatccaaacatagcctaa 11354713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 21278 - 21618
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21278 gagaagaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 21377  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21378 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaagga 21477  T
Q  212 ttgagtggtatagaatggaattgg----------ttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 301  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21478 ttgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 21577  T
Q  302 ccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  21578 ccattctattccactacaacccatcaatccaaacatagcct 21618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 20983515 - 20983184
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20983515 gagaagaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 20983416  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  20983415 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcatttcattggatacctcccaaattggggggaataagaaattgaagga 20983316  T
Q  212 ttgagtggtatagaatggaattggttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcattccattccatt 311  Q
    |||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20983315 ttgagtggtatagaatggaattggtttcattgcattccat-tccatcccatcaatccaaacaatggaattttattatataccatctcattccattctatt 20983217  T
Q  312 ccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||||||||||||||||||||||    
T  20983216 ccactacaacccatcaatccaaacatagcctaa 20983184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 49368220 - 49368566
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49368220 gagaagaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 49368319  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49368320 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 49368419  T
Q  212 ttgagtggtatagaatggaattgg----------ttccattccattccatgtacatc----ccatcaatccaaacaatggaattttattatataccatct 297  Q
    ||||||||||||||||||||||||          |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  49368420 ttgagtggtatagaatggaattggttccattgcattccattccattccatgtacatccattccatcaatccaaacaatggaattttattatataccatct 49368519  T
Q  298 cattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49368520 cattccattccattccactacaacccatcaatccaaacatagcctaa 49368566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 42029279 - 42029356
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    |||||||||||||||  |||||||||||  |||||| ||||||||||| |||||||||| | ||||||| ||||||||    
T  42029279 cattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccat 42029356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 32278390 - 32278313
Alignment:
Q  267 ccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||| | | | ||| ||||| |||||||||||||||||| ||   |||||||||||||||||||||||    
T  32278390 ccaaacaatggaatctaactctattccatcccattccattccattccaccactctccatcaatccaaacatagcctaa 32278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 14567978 - 14567892
Alignment:
Q  165 attccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattccattccat 251  Q
    ||||||||||||||  |||||||||||| |||||| |||||||||| |||  |||||| | |||||||  ||||||||  |||||||    
T  14567978 attccattggatacaccccaaattggggggaatgaaaaattgaaggtttggatggtattggatggaatgagttccattgtattccat 14567892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 25045364 - 25045312
Alignment:
Q  292 ccatctcattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||| ||||||||||||||||||| ||   |||||||||||||||||||||||    
T  25045364 ccatttcattccattccattccaccactctccatcaatccaaacatagcctaa 25045312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 27011319 - 27011239
Alignment:
Q  161 tttcattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    ||||||||||||||||||  ||||||||||   |||||| |||||| | || |||||||||| | ||||||| ||||||||    
T  27011319 tttcattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccat 27011239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 39439998 - 39440053
Alignment:
Q  298 cattccattccattccactacaacccatcaatccaaacatagcctaattgttcacc 353  Q
    |||||||||||||||||| ||   ||||||||||||||||||||||| | ||||||    
T  39439998 cattccattccattccaccactctccatcaatccaaacatagcctaaatcttcacc 39440053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 40024844 - 40024899
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtgg 219  Q
    |||||||||||||||  |||||||||||  |||||| ||||||||||| |||||||    
T  40024844 cattccattggatacaccccaaattgggaggaatgaaaaattgaaggaatgagtgg 40024899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 35231961 - 35231999
Alignment:
Q  306 tccattccactacaacccatcaatccaaacatagcctaa 344  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  35231961 tccattccattacaatccatcaatccaaacatagcctaa 35231999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 11456639 - 11456688
Alignment:
Q  163 tcattccattggatacctcccaaattggggagaatgagaaattgaaggat 212  Q
    |||||||||||||||| || |||||||||| ||| || ||||||||||||    
T  11456639 tcattccattggatacatctcaaattggggggaaagaaaaattgaaggat 11456688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 20717441 - 20717781
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20717441 gagaagaagaagagcagtcagtagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 20717540  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20717541 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaagga 20717640  T
Q  212 ttgagtggtatagaatggaattgg----------ttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 301  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20717641 ttgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatctcatt 20717740  T
Q  302 ccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  20717741 ccattctattccactacaacccatcaatccaaacatagcct 20717781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 28219153 - 28219076
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    |||||||||||||||  |||||||||||  |||||| ||||||||||| |||||||||| | ||||||| ||||||||    
T  28219153 cattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccat 28219076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 6476812 - 6476763
Alignment:
Q  298 cattccattccattccactacaacccatcaatccaaacatagcctaattg 347  Q
    |||||||||||||||||| ||   ||||||||||||||||||||| ||||    
T  6476812 cattccattccattccaccactctccatcaatccaaacatagccttattg 6476763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 28199321 - 28199393
Alignment:
Q  267 ccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagc 340  Q
    |||||||||||||| | | | ||| ||||| |||||||||||||||||| ||  | ||||||||||||||||||    
T  28199321 ccaaacaatggaatctgactctattccatcccattccattccattccaccac-tctcatcaatccaaacatagc 28199393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 44246466 - 44246389
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    |||||||||||||||  ||||||||||   |||||| |||||||| || |||||||||| | |||||||  |||||||    
T  44246466 cattccattggatacaccccaaattggatggaatgaaaaattgaaagaatgagtggtattggatggaatgagttccat 44246389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 33091423 - 33091082
Alignment:
Q  12 gagatgaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33091423 gagaagaagaagagcagtcagcagtacaaagaagatgaaagtgaaatgcagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagag 33091324  T
Q  112 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaagga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33091323 gaagaggcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggggaatgagaaattgaagga 33091224  T
Q  212 ttgagtggtatagaatggaattggttc----------cattccattccatgtacat-cccatcaatccaaacaatggaattttattatataccatctcat 300  Q
    |||||||||||||||||||||||||||          |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33091223 ttgagtggtatagaatggaattggttccattgcattccattccattccacgtacatccccatcaatccaaacaatggaattttattatataccatctcat 33091124  T
Q  301 tccattccattccactacaacccatcaatccaaacatagcct 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33091123 tccattccattccactacaacccatcaatccaaacatagcct 33091082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 3639131 - 3639047
Alignment:
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcctaattgtt 349  Q
    |||||||||||| || ||||||||||||||   ||| |||||||||||||| |||  ||||||||||||||| ||||||| ||||    
T  3639131 atccaaacaatgaaactttattatataccactccatcccattccattccaccacatgccatcaatccaaacaaagcctaagtgtt 3639047  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 4289985 - 4290026
Alignment:
Q  341 ctaattgttcaccaaaccgctaaaaatcagtgtgatattttt 382  Q
    |||||| |||||| | ||||||||||||||||||||||||||    
T  4289985 ctaatttttcaccgatccgctaaaaatcagtgtgatattttt 4290026  T

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Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 7237694 - 7238033
Alignment:
Q  20 gaagagcagtcagcagtacaaagaagatgaaagtgaaatg--cagtgagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagaggaagag 117  Q
    |||||||||||| ||||||| |||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||| ||||  |||||||||||||    
T  7237694 gaagagcagtcaacagtacagagaagatgaaagtgaaatgagcagtcagtaaaaatagagaaaagaacgtgttgaaaattatgatcaagtagaggaagag 7237793  T
Q  118 gcaaataaaaggagggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaaggattgagt 217  Q
    |||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  7237794 gcaaataaaatgagggtagaatagtaaaatttaaagacacaagttttattccattggatacctcccaaatttgggggaatgagaaattgaaggattgagt 7237893  T
Q  218 ggtatagaatggaattg----------gttccattccattccatgtacatcccatcaatccaaacaatggaattttattatataccatc-----tcattc 302  Q
    | |||||||||||||||          |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||      |||||    
T  7237894 gatatagaatggaattgattccattgtgttccattccgttccatttacatcccatcaatccaaacaatgaaattttattatataccatcacattccattc 7237993  T
Q  303 cattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  7237994 cattccattccactacaacccatcaatccaaacagagcct 7238033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 23113951 - 23113833
Alignment:
Q  184 aaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttc----------cattccattccatgtacatcccatcaatccaaaca 273  Q
    |||||||||  |||||||||||||| ||||||||||||| |||||||||||||||          ||||||||||||| |||||||||||||||||||||    
T  23113951 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattccattccatttacatcccatcaatccaaaca 23113852  T
Q  274 atggaattttattatatacc 293  Q
    |  |||||| ||||||||||    
T  23113851 a-cgaatttaattatatacc 23113833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 23114009 - 23113961
Alignment:
Q  105 agtagaggaagaggcaaataaaaggagggtagaatagtaaaatttcaag 153  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  23114009 agtagaggaagaggcaaataaaatgagggtagaatagtaacatttcaag 23113961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 23417210 - 23417287
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    |||||||||||||||  ||||||||||   |||||| |||||| | || |||||||||| | ||||||| ||||||||    
T  23417210 cattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccat 23417287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 19625439 - 19625367
Alignment:
Q  267 ccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatag 339  Q
    |||||||||| ||| | | | ||| ||||| |||||||||||||||||| ||   ||||||||||||||||||    
T  19625439 ccaaacaatgaaatctgactctattccatcccattccattccattccaccactctccatcaatccaaacatag 19625367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 32651123 - 32651072
Alignment:
Q  341 ctaattgttcaccaaaccgctaaaaatcagtgtgatatttttgcttcccgtt 392  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32651123 ctaattgttcaccgaaccgctaaaaatcagtgtgatatttttgcttcccgtt 32651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 34495112 - 34495191
Alignment:
Q  265 atccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||||||||| | ||| ||||  ||| ||||||||| ||| | ||  |||||||||||||||||||||||    
T  34495112 atccaaacaatggaattttaatttattccattccatcccattccatcccattgcattccatcaatccaaacatagcctaa 34495191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 41809886 - 41809973
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattccattccat 251  Q
    |||||||||| |||| ||||||||||||| |||||  |||||| | || |||||||||||  ||||||| ||||||||  ||||||||    
T  41809886 cattccattgaatacatcccaaattggggggaatggaaaattggatgaatgagtggtatatcatggaatgggttccatcacattccat 41809973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 21263574 - 21263654
Alignment:
Q  161 tttcattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    |||||||||||| |||||  ||||||||||   |||||  ||||||||||| |||||||||| | ||||||| ||||||||    
T  21263574 tttcattccattcgatacaccccaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttccat 21263654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 35033924 - 35033999
Alignment:
Q  267 ccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||| | | | ||| ||| | |||||||||||||||||| ||   |||||||||||||||||||||    
T  35033924 ccaaacaatggaatctgactttattccaacccattccattccattccaccactctccatcaatccaaacatagcct 35033999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 26861354 - 26861440
Alignment:
Q  165 attccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattccattccat 251  Q
    ||||||||||||||  ||||| |||| | |||||| |||||||||| ||| ||||||| | |||||||  ||||||||  |||||||    
T  26861354 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccat 26861440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 21263721 - 21263765
Alignment:
Q  298 cattccattccattccactacaacccatcaatccaaacatagcct 342  Q
    |||||||||||||||||| |||  ||| |||||||||||||||||    
T  21263721 cattccattccattccaccacacaccaccaatccaaacatagcct 21263765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 848 - 737
Alignment:
Q  130 agggtagaatagtaaaatttcaagacacaaatttcattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatgg 229  Q
    |||||| ||| |||| |||||||||  || |||||||||||||| ||||  |||||||| ||| || ||| ||||||||||||||||||||||| |||||    
T  848 agggtaaaatggtaatatttcaagattcatatttcattccattg-atacaccccaaattagggggattgaaaaattgaaggattgagtggtatataatgg 750  T
Q  230 aattggttccatt 242  Q
     |||| |||||||    
T  749 cattgattccatt 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 703 - 634
Alignment:
Q  264 aatccaaacaatggaattttattatataccatctcattccattccattccactacaacccatcaatccaa 333  Q
    ||||||||||||| |||||  |||||||||||   |||||| |||||||||| ||| |||||||||||||    
T  703 aatccaaacaatgaaatttacttatataccattcaattccactccattccaccacatcccatcaatccaa 634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 57051 - 56974
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    |||||||||||||||||||||| |||||| |||||| ||| |||   | |||||||||| | ||||||||||||||||    
T  57051 cattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtattggatggaattggttccat 56974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 30132 - 30219
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattccattccat 251  Q
    |||| ||||||||||  |||||||||||| |||||  |||||| | || |||||||||||  ||||||| ||||||||  ||||||||    
T  30132 catttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttccatcacattccat 30219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 44257 - 44303
Alignment:
Q  298 cattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||    
T  44257 cattccattccattccaccactctccatcaatccaaacatagcctaa 44303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 77978 - 78024
Alignment:
Q  298 cattccattccattccactacaacccatcaatccaaacatagcctaa 344  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||    
T  77978 cattccattccattccaccactctccatcaatccaaacatagcctaa 78024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 38567 - 38644
Alignment:
Q  164 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccat 241  Q
    ||||||||||||||| ||||||||||    |||||| |||||| | || |||||||||| | ||||||| ||||||||    
T  38567 cattccattggatacatcccaaattgaatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccat 38644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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