View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_21 (Length: 435)
Name: NF16688_low_21
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 5021973 - 5022383
Alignment:
| Q |
1 |
tgttattgcttgaagcagtattcaactcagggacctcaaaattatcaagaactattcaaatttcgtcatgctttacttcaaaatgtgattgatggagctt |
100 |
Q |
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| T |
5021973 |
tgttattgcttgaagcagtattcaactcagggacctcaaaattatcaagaactattcaaatttcgtcatgctttacttcaaaatgtgattgatggagctt |
5022072 |
T |
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| Q |
101 |
ttggagttctcaagaaaagatttccgattacaactggtgacaatgaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatctt |
200 |
Q |
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| T |
5022073 |
ttggagttctcaagaaaagatttccgattacaactggtgacaatgaatcatatttttcaattcgaaccatgacacgtataatcagtgcttgttgtatctt |
5022172 |
T |
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| Q |
201 |
gcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaactg |
300 |
Q |
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| T |
5022173 |
gcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatcgtgaattgctacatgacaaaagtcgatacatatcaaagaaacgg |
5022272 |
T |
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| Q |
301 |
aaacttgaagtggactctgaagaaaaaccgagttcaagtaagaaaattgctttggaaatgtggaatgcttatgaagtataatatgctgaatgtatatctc |
400 |
Q |
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| T |
5022273 |
aaacttgaagtggactctgaagaaaaaccgagttcaagtaagaaaattgctttggaaatgtggaatgcttatgaagtat----------atgtatatctc |
5022362 |
T |
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| Q |
401 |
atgtttctggctgttggtttt |
421 |
Q |
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| T |
5022363 |
atgtttctggctgttggtttt |
5022383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 5019430 - 5019511
Alignment:
| Q |
175 |
cgtataatcagtgcttgttgtatcttgcacaacttccttatgggcattgacattgatgaacaaataattgctgaagtagatc |
256 |
Q |
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| T |
5019430 |
cgtataatcattgcttgttgtgttttgcataactttcttatggaagttgacattgacgaacaaatgattgctgaagtagatc |
5019511 |
T |
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