View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_22 (Length: 432)

Name: NF16688_low_22
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_22
NF16688_low_22
[»] chr1 (7 HSPs)
chr1 (19-217)||(574271-574469)
chr1 (177-224)||(30780985-30781032)
chr1 (115-168)||(3622591-3622643)
chr1 (93-165)||(41883044-41883117)
chr1 (128-168)||(4530249-4530289)
chr1 (177-225)||(36385667-36385715)
chr1 (177-225)||(38688642-38688690)
[»] chr3 (5 HSPs)
chr3 (19-224)||(49245192-49245396)
chr3 (177-224)||(45297549-45297596)
chr3 (115-218)||(21811885-21811988)
chr3 (115-168)||(37105016-37105069)
chr3 (128-168)||(44384570-44384610)
[»] scaffold0129 (1 HSPs)
scaffold0129 (177-225)||(43219-43267)
[»] chr8 (1 HSPs)
chr8 (88-167)||(41706688-41706767)
[»] chr6 (1 HSPs)
chr6 (177-224)||(28975340-28975387)
[»] chr5 (3 HSPs)
chr5 (177-224)||(4301905-4301952)
chr5 (177-224)||(12201377-12201424)
chr5 (115-168)||(2458293-2458346)
[»] chr4 (3 HSPs)
chr4 (177-224)||(41261891-41261938)
chr4 (115-168)||(37275144-37275197)
chr4 (119-168)||(39862822-39862871)
[»] chr2 (1 HSPs)
chr2 (177-218)||(43790430-43790471)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 9e-77; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 574271 - 574469
Alignment:
Q  19 aaaaacactaagaaaccaagttagctaaacaaaaattcaggatctgaaaaagagggagatggtagggactaggtaggttgaagacaagttataaagatat 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  574271 aaaaacactaagaaaccaaggtagctaaacaaaaattcaggatctgaaaaagagggagatggtagggactaggtaggttgaagacaagttataaagatat 574370  T
Q  119 agtgtagacagactatagtaagatcaatgtttctatgtaatctaatggttgnnnnnnnctttcccatgataggaaacaactctccttttccatattaaa 217  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||       |||||| ||||||  |||||||||||||||  |||||||||    
T  574371 agtgtagactgactatagtaagatcaatgtttctatgtaatttaatggttgaaaaaaactttcctatgataaaaaacaactctcctttctcatattaaa 574469  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 30780985 - 30781032
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 224  Q
    |||||||||||| ||||||||||||||||| |||| ||||||| ||||    
T  30780985 ctttcccatgatgggaaacaactctcctttcccatgttaaacctcacc 30781032  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 3622591 - 3622643
Alignment:
Q  115 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 168  Q
    ||||||||| ||||| ||||||||||||||||||| || | |||||||||||||    
T  3622591 atatagtgtggacagtctatagtaagatcaatgttcct-tttaatctaatggtt 3622643  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 41883117 - 41883044
Alignment:
Q  93 aggttgaagacaa-gttataaagatatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatg 165  Q
    ||||||||||||| || | ||||||||||||| || |||||||| ||| || ||||||||| | ||||||||||    
T  41883117 aggttgaagacaaagtgagaaagatatagtgtggatagactataataaaataaatgtttctctttaatctaatg 41883044  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 4530289 - 4530249
Alignment:
Q  128 agactatagtaagatcaatgtttctatgtaatctaatggtt 168  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  4530289 agactataatatgatcaatgtttctatttaatctaatggtt 4530249  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 36385715 - 36385667
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 225  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||    
T  36385715 ctttcccatgatggaaaacaacttcccttttccatactaaaccccacca 36385667  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 38688642 - 38688690
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 225  Q
    ||||||||| || |||||||||| | |||| ||||||||||||||||||    
T  38688642 ctttcccatcatgggaaacaacttttctttcccatattaaaccccacca 38688690  T

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Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 49245192 - 49245396
Alignment:
Q  19 aaaaacactaagaaaccaagttagctaaacaaaaattcaggatctgaaaaagagggagatggtagggactaggtaggttgaagacaagttataaagatat 118  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  49245192 aaaaacactaagaaaccaaggtagttaaacaaaaattcag-atctgaaaaagagggagatggtagggactacgtacgttgaagacaagttataaagatat 49245290  T
Q  119 agtgtagacagactatagtaagatcaatgtttctatgtaatctaatggttgnnnnnnnctttcccatgataggaaacaactctccttttccatattaaac 218  Q
    | ||||| ||||||||| ||| ||||||||| ||||||||| |||||||||       |||| |||||||   ||| |||||||||||  ||||||||||    
T  49245291 aatgtaggcagactataataaaatcaatgttcctatgtaatttaatggttgaaaaaaacttttccatgatgaaaaataactctcctttcgcatattaaac 49245390  T
Q  219 cccacc 224  Q
     |||||    
T  49245391 tccacc 49245396  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 45297596 - 45297549
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 224  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  45297596 ctttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 21811988 - 21811885
Alignment:
Q  115 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggttgnnnnnnnctttcccatgataggaaacaactctccttttccatatt 214  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||        |||||||||| ||||||| || |||| ||| ||| |||    
T  21811988 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtttaaaatacctttcccatggtaggaaaaaagtctcatttcccaaatt 21811889  T
Q  215 aaac 218  Q
    ||||    
T  21811888 aaac 21811885  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 37105016 - 37105069
Alignment:
Q  115 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 168  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||    
T  37105016 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtt 37105069  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 44384610 - 44384570
Alignment:
Q  128 agactatagtaagatcaatgtttctatgtaatctaatggtt 168  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  44384610 agactataatatgatcaatgtttctatttaatctaatggtt 44384570  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 43219 - 43267
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 225  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  43219 ctttcccatgatgggaaacaactccccttttccatactaaaccccacca 43267  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 41706767 - 41706688
Alignment:
Q  88 taggtaggttgaagacaagttataaagatatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggt 167  Q
    |||| |||||||||||||   | || |||||||||||| | ||| ||| |||||||||||||||| | ||||||||||||    
T  41706767 taggaaggttgaagacaaacaagaacgatatagtgtaggctgaccataataagatcaatgtttctctttaatctaatggt 41706688  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 28975387 - 28975340
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 224  Q
    |||| ||||||||||||||||||||||||| ||||  |||||||||||    
T  28975387 cttttccatgataggaaacaactctcctttcccatgctaaaccccacc 28975340  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 4301952 - 4301905
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 224  Q
    |||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  4301952 ctttcccatgatgggaaagaacttcccttttccatattaaaccccacc 4301905  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 12201424 - 12201377
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 224  Q
    ||||| |||| ||||||||||||||||||| ||||| |||||||||||    
T  12201424 ctttctcatggtaggaaacaactctcctttcccatactaaaccccacc 12201377  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 2458293 - 2458346
Alignment:
Q  115 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 168  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||    
T  2458293 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtt 2458346  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 41261891 - 41261938
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 224  Q
    |||||||||| ||||||||||||||| ||| ||||| |||||||||||    
T  41261891 ctttcccatggtaggaaacaactctcatttcccatactaaaccccacc 41261938  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 37275197 - 37275144
Alignment:
Q  115 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 168  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||    
T  37275197 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtt 37275144  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 39862822 - 39862871
Alignment:
Q  119 agtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 168  Q
    ||||| ||||| |||||||||||||||||||||| | ||||||| |||||    
T  39862822 agtgtggacagtctatagtaagatcaatgtttctttttaatctattggtt 39862871  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 43790430 - 43790471
Alignment:
Q  177 ctttcccatgataggaaacaactctccttttccatattaaac 218  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  43790430 ctttcccatgataggaaagaacttcccttttccatattaaac 43790471  T

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