View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_24 (Length: 428)
Name: NF16688_low_24
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 414
Target Start/End: Original strand, 25270518 - 25270903
Alignment:
| Q |
29 |
tatgtgtggtgttgtatcgtggatagtgttagttgtgggaccaattacaa-aaggaactaaacgtgtcaaaatccttaattgccaacaaaaagactcaag |
127 |
Q |
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| T |
25270518 |
tatgtgtagtgttataacatggatagtgttagttgtgggacca-ttacaacaagcaactaaacgtgtcaaaatccttaattgccaacaaaa-gactcaag |
25270615 |
T |
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| Q |
128 |
tttacatctcctcttccttnnnnnnnnnnnnnngtttacatctcctctttagtaggnnnnnnnn-gtatacatcacctctttgtgattgagaattatatt |
226 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25270616 |
tttacatctcctcttccttaaaaaaataaaaaagtttacatctcctctttagtaggaaaaaaaaagtatacatcacctctttgtgattgagaattatatt |
25270715 |
T |
|
| Q |
227 |
tctttgatgcaaatannnnnnnattattgtttattttaattaactctatctcaattttcccagaatcttcaggtaatttattgggtgagaaatattgtta |
326 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25270716 |
tctttgatgcaaatatttttttattattgtttattttaattaactctatctcaattttcctagaatcttcaggtaatttattgggtgagaaatattgtta |
25270815 |
T |
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| Q |
327 |
gaaattgtttttataacctattattgaatctaagccacgccagtatgtttgacaatttccattcatgtcataattgctgctactattt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
25270816 |
gaaattgtttttataacctattattgaatctaagccacgccagtatgcttgacaatttccattcatgtcataattggtgctactattt |
25270903 |
T |
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