View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_25 (Length: 426)
Name: NF16688_low_25
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 45363335 - 45363747
Alignment:
| Q |
1 |
gccactagtaccatacacataacacgccaaaagattaatgaaagtcagtgtttcaataaccaaaatggtatggcggacaaaaaagttaattttacaatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45363335 |
gccactagtaccatacacataacacgccaaaagattaatgaaagtcagtgtttcaataaccaaaatggtatggcggacaaaaaagttaattttacattag |
45363434 |
T |
|
| Q |
101 |
cttgacaagtattctgcatgtacagccnnnnnnnntataaacatgtcggctataagtaattggtttcaacaaaaggttgctatgttggagaaagcaaata |
200 |
Q |
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| T |
45363435 |
cttgacaagtattctgcatgtacagc-aaaaaaaatataaacatatcggctataagtaattggtttcaacaaaaggttgctatgttggagaaagcaaata |
45363533 |
T |
|
| Q |
201 |
catctagaaaactaacaatcttgaaataaaattttatgaccataagtcaacaggtagagtcaattcgatatgagaaccccctagaattataagtcacgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
45363534 |
catctagaaaactaacaatcttgaaataaaattttatg-ccataagtcaacaggtagagtcaattagatatgagaaccccctaaaattataagccacgct |
45363632 |
T |
|
| Q |
301 |
tattgggtgactcactcttgtgtgtaataaaaatgcacacaagtttgagatccattgttcttaacagctgcatatccatgatacttcaatcaactataaa |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45363633 |
tattgggtgactcactctcgtgtgtaataaaaatgcacacaagtttgagatccactgttcttaacagctgcaaatccatgatacttcaatcaactataaa |
45363732 |
T |
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| Q |
401 |
ttttgtgcctatgct |
415 |
Q |
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| T |
45363733 |
ttttgtgcctatgct |
45363747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45363264 - 45363300
Alignment:
| Q |
1 |
gccactagtaccatacacataacacgccaaaagatta |
37 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
45363264 |
gccactagtaccatacacataacatgccaaaagatta |
45363300 |
T |
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