View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_26 (Length: 406)
Name: NF16688_low_26
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_26 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 246 - 384
Target Start/End: Original strand, 31032675 - 31032814
Alignment:
| Q |
246 |
gcttaaaataatttaccaaattaagct--catgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataat |
343 |
Q |
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| T |
31032675 |
gcttgaaataatttaccaaattaagctttcatgtcgtcaagcaatttggccaataaacatgaatcttgaactatgccaacatgaattccgaattggaaat |
31032774 |
T |
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| Q |
344 |
tgaaactcaaaaattcaattcaagcaaagaatctaatggtc |
384 |
Q |
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| T |
31032775 |
tgatactc-aaaattcaattcaagcaaagaatgtaatggtc |
31032814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 388
Target Start/End: Original strand, 31022783 - 31022929
Alignment:
| Q |
246 |
gcttaaaataatttaccaaattaagctc--atgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataat |
343 |
Q |
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| T |
31022783 |
gcttgaaacaatttaccaaattaagctctcatgtcatcatgcaatttgaccaataaacatgaatcttgaaccatgccaacatgaataccaaattggaaat |
31022882 |
T |
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| Q |
344 |
tgaaact--caaaaattcaattcaagcaaagaatctaatggtcaaac |
388 |
Q |
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| T |
31022883 |
tgatactaaaaaaaattcaattcaagcaaagaatctaatggtcaaac |
31022929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 31048735 - 31048786
Alignment:
| Q |
123 |
aataataacatggatgattgatattctagtcatttagccaaatttagtataa |
174 |
Q |
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| T |
31048735 |
aataataatatggatgattgattttctagttatttagccaaatttggtataa |
31048786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 31102806 - 31102891
Alignment:
| Q |
299 |
aacatgaatcttgaac----tatgccaacatgaattccgaattgataattgaaact-caaaaattcaattcaagcaaagaatctaa |
379 |
Q |
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| T |
31102806 |
aacatgaatcttgaactatatatgccaacatgaaatccaaatttatagttgatactcctaaaattcaatacaagcaaacaatctaa |
31102891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 3386 - 3299
Alignment:
| Q |
302 |
atgaatcttgaactatgccaacatgaattccgaattgataattgaaactcaaaaa-ttcaattcaagcaaagaatctaatggtcaaac |
388 |
Q |
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| T |
3386 |
atgaatcttgaaatatgccaacatgaatttcgaattagaaattgatactaaaaaaattcaattcaagcaaagaatctaatggtcaaac |
3299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 18430318 - 18430243
Alignment:
| Q |
271 |
ctcatgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataattga |
346 |
Q |
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| T |
18430318 |
ctcatgtcatcaagcaattttaccaataagcatgaatcttgaaatatgccaacttgaaatccaaattgatagttga |
18430243 |
T |
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