View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_28 (Length: 402)
Name: NF16688_low_28
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 28009623 - 28009505
Alignment:
| Q |
268 |
cttgctaaatgtttccataagttgaagcattccaacttgagcttgaagaaacatgacataattagcagcagcattaagcatctctgctgtgttcatcttt |
367 |
Q |
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| T |
28009623 |
cttgctaaatgtttccataagttgaagcattccaacttgagcttgaagaaacttgacataattagcagcagcattaagcatctctgctgtgttcatcttt |
28009524 |
T |
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| Q |
368 |
ggtccaccaggaaccaact |
386 |
Q |
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| T |
28009523 |
ggtccaccaggaaccaact |
28009505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 28009664 - 28009627
Alignment:
| Q |
211 |
aattatgagctctaataatataagaactttgcagcaat |
248 |
Q |
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| T |
28009664 |
aattatgagctctaataatataagaacattgcaacaat |
28009627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 268 - 386
Target Start/End: Original strand, 26427258 - 26427376
Alignment:
| Q |
268 |
cttgctaaatgtttccataagttgaagcattccaacttgagcttgaagaaacatgacataattagcagcagcattaagcatctctgctgtgttcatcttt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427258 |
cttgctaaatgtttccataagttgaagcattccaacttgagcttgaagaaacttgacataattagcagcagcattaagcatctctgctgtgttcatcttt |
26427357 |
T |
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| Q |
368 |
ggtccaccaggaaccaact |
386 |
Q |
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||||||||||||||||||| |
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| T |
26427358 |
ggtccaccaggaaccaact |
26427376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 26427007 - 26427070
Alignment:
| Q |
9 |
agcaaagggtcttcacacaaagtaaccacatatatatgcaatgaacaaacaaaccctaggtatt |
72 |
Q |
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| T |
26427007 |
agcaaagggtcttcacacaaagtaaccaaatatatatgcaatgaacaaacacactctaggtatt |
26427070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 26427147 - 26427225
Alignment:
| Q |
152 |
attcacttggagtgttacataagccctaattaaggacacacaacaagtaaattaaattcaattatgagctctaataatataagaa |
236 |
Q |
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||||||||||||||||| ||||| || |||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
26427147 |
attcacttggagtgtta-ataagacc----taagaacacaaaacaagt-aattaaattcaactatgagctctaataatataagaa |
26427225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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