View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_31 (Length: 391)
Name: NF16688_low_31
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 39985789 - 39985431
Alignment:
| Q |
21 |
tgtgcttccggatgattaagtgcaatgcgtttgtagacagtgcgccaattgggtttagcaaaatgagacatgacacgagtgccggaaacaacatccacac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
39985789 |
tgtgcttccggatgattaagtgcaatgcgtttgtagacagtgcgccaattgggtttagcaaaatgagacatgacacgagtgccggacacaacatccaccc |
39985690 |
T |
|
| Q |
121 |
cgtgctttgcatggtttatagactgcaccatagcgataagagcagagcgagcatcaccctgttcgtaaacgctggtgcagtagctgtgtagctcaatcaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39985689 |
cgtgctttgcatggtttatagactgcaccatagcgataagagcagagcgtgcatcaccctgttcgtaaacactggtgcagtagctgtgtagctcaatcaa |
39985590 |
T |
|
| Q |
221 |
tccccttctatcctcctcagctacatcattcatcacccctttaaaccaatcaaaggaaccctgctctcttgtcacccaatagaagtatgccctccttgtc |
320 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39985589 |
tccccttctatcctcctcaggtacatcattcatcacccctttaaaccaatcaaaggaaccctgctctcttgtcacccaatagaagtatgccctccttgtc |
39985490 |
T |
|
| Q |
321 |
ttgaagtcgctgaacctagagtctttctggtttggtgtcatcggtgacccttcctccat |
379 |
Q |
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| T |
39985489 |
ttgaagtcactgaacctagagtctttctggtttggtgtcatcggtgacccttcctccat |
39985431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 41558781 - 41558713
Alignment:
| Q |
236 |
ctcagctacatcattcatcacccctttaaaccaatcaaaggaaccctgctctcttgtcacccaatagaa |
304 |
Q |
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| T |
41558781 |
ctcagctacttcattcatgactcctttgaaccaatcaaaagagccttgctctcttgtaacccagtagaa |
41558713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 44918119 - 44917851
Alignment:
| Q |
30 |
ggatgattaagtgcaatgcgtttgtagacagtgcgccaattgggtttagcaaaatgagacatgacacgagtgccggaaacaacatccacaccgtgctttg |
129 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||| ||||||||||| |||||| |||| || || || || || | ||||||||| | || | |
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| T |
44918119 |
ggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgtgttccagagacgatatccacaccatttttag |
44918020 |
T |
|
| Q |
130 |
catggtttatagactgcaccatagcgataagagcagagcgagcatcaccctgttcgtaaacgctggtgcagtagctgtgtagctcaatcaatccccttct |
229 |
Q |
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|||| || | || || | |||||| ||||||||||||||||||||||||| ||| ||||| || || || || ||||||||||||| | |||||| |
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| T |
44918019 |
catgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtacaataattgtgtagctcaattactcccctatg |
44917920 |
T |
|
| Q |
230 |
atcctcctcagctacatcattcatcacccctttaaaccaatcaaaggaaccctgctctcttgtcaccca |
298 |
Q |
| |
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||| || ||||| || |||||||| || ||||||||||||||||| |||||||| ||||| || ||||| |
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| T |
44917919 |
atcatcttcagccacctcattcattactcctttaaaccaatcaaatgaaccctgttctctagtaaccca |
44917851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 44901369 - 44901305
Alignment:
| Q |
30 |
ggatgattaagtgcaatgcgtttgtagacagtgcgccaattgggtttagcaaaatgagacatgac |
94 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| ||| || ||| ||||||| |||||| |||| |
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| T |
44901369 |
ggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgac |
44901305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 37068577 - 37068513
Alignment:
| Q |
240 |
gctacatcattcatcacccctttaaaccaatcaaaggaaccctgctctcttgtcacccaatagaa |
304 |
Q |
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||||| ||||||||||| ||||||||||| ||||| ||||| ||||| | || ||||||||||| |
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| T |
37068577 |
gctacctcattcatcacacctttaaaccattcaaacgaaccttgctcacgagtaacccaatagaa |
37068513 |
T |
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