View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_33 (Length: 388)
Name: NF16688_low_33
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 3743786 - 3744139
Alignment:
| Q |
19 |
atagtaataaggatgctttgggtttgaaagcatggaagtatagacaaactcaacagattctccgtctccggcgccggttatggtgtcattgtgacgaccg |
118 |
Q |
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| T |
3743786 |
atagtaataaggatgctttgggtttgaaagcatggaagtatagacaaactcaacagattctccgtctccggcgccggttatggtgtcattgtgacgaccg |
3743885 |
T |
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| Q |
119 |
agaatgagtggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggtgagagagtagaga |
218 |
Q |
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| T |
3743886 |
agaatgagtggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggtgagagagtagaga |
3743985 |
T |
|
| Q |
219 |
gctgtgccggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcgagtgcagtatgagcacaaccaaacgtgaaattctgaagatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
3743986 |
gctgtgccggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcaagtgcagtatgagcacaaccaaacgtgaagttttgaagatg |
3744085 |
T |
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| Q |
319 |
aagagtagagatagacagtgtttgttggtagagattagcgacgaagcttccatc |
372 |
Q |
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||||| ||||| ||| ||||||||||| || |||||||| |||||||||||||| |
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| T |
3744086 |
aagagaagagagagaaagtgtttgttgatacagattagctacgaagcttccatc |
3744139 |
T |
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