View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_34 (Length: 388)

Name: NF16688_low_34
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_34
NF16688_low_34
[»] chr8 (16 HSPs)
chr8 (19-345)||(29735834-29736160)
chr8 (49-271)||(35914604-35914826)
chr8 (84-227)||(30559785-30559928)
chr8 (80-163)||(45419323-45419406)
chr8 (82-227)||(29520740-29520884)
chr8 (113-199)||(13589600-13589686)
chr8 (104-236)||(5908758-5908890)
chr8 (114-204)||(18125294-18125384)
chr8 (80-238)||(26904943-26905100)
chr8 (114-204)||(28169514-28169604)
chr8 (112-226)||(39946977-39947091)
chr8 (185-227)||(42584552-42584594)
chr8 (121-167)||(45512602-45512648)
chr8 (189-258)||(4955388-4955457)
chr8 (179-227)||(490522-490570)
chr8 (179-231)||(16035770-16035822)
[»] chr6 (9 HSPs)
chr6 (16-235)||(9593749-9593964)
chr6 (88-227)||(5095930-5096069)
chr6 (17-150)||(28026951-28027083)
chr6 (121-227)||(34552-34658)
chr6 (114-234)||(33497081-33497201)
chr6 (80-227)||(12890663-12890810)
chr6 (117-235)||(9568817-9568942)
chr6 (125-227)||(31818664-31818766)
chr6 (82-146)||(3963889-3963953)
[»] chr1 (25 HSPs)
chr1 (16-223)||(9509342-9509549)
chr1 (22-195)||(52561668-52561841)
chr1 (81-227)||(9599441-9599587)
chr1 (100-236)||(16142018-16142154)
chr1 (135-238)||(27520243-27520346)
chr1 (39-198)||(34827179-34827339)
chr1 (16-227)||(32404573-32404784)
chr1 (80-225)||(38807720-38807865)
chr1 (131-215)||(29128922-29129006)
chr1 (80-151)||(36623995-36624066)
chr1 (88-227)||(39318225-39318364)
chr1 (32-231)||(39140560-39140754)
chr1 (104-256)||(11941598-11941750)
chr1 (82-236)||(52832135-52832289)
chr1 (16-129)||(27847950-27848063)
chr1 (115-215)||(3818915-3819015)
chr1 (179-227)||(12930358-12930406)
chr1 (120-227)||(41560357-41560464)
chr1 (131-228)||(7762483-7762580)
chr1 (185-271)||(28090697-28090783)
chr1 (82-215)||(40416461-40416594)
chr1 (179-231)||(52739553-52739606)
chr1 (102-231)||(52878342-52878471)
chr1 (115-147)||(8343008-8343040)
chr1 (11-147)||(18469209-18469345)
[»] chr7 (17 HSPs)
chr7 (16-228)||(36136788-36137000)
chr7 (125-227)||(21517427-21517529)
chr7 (82-227)||(28627980-28628125)
chr7 (132-227)||(36239843-36239938)
chr7 (17-227)||(2885769-2885979)
chr7 (114-227)||(40979975-40980088)
chr7 (78-139)||(1011133-1011194)
chr7 (80-164)||(7189329-7189414)
chr7 (107-227)||(9210751-9210871)
chr7 (100-234)||(35922362-35922495)
chr7 (105-227)||(44401174-44401294)
chr7 (78-146)||(1531489-1531557)
chr7 (115-227)||(45601599-45601711)
chr7 (88-227)||(38135260-38135399)
chr7 (179-236)||(36101815-36101872)
chr7 (17-161)||(13859121-13859265)
chr7 (47-123)||(46973653-46973729)
[»] chr4 (20 HSPs)
chr4 (20-227)||(51421758-51421965)
chr4 (78-227)||(45204887-45205034)
chr4 (80-260)||(39708521-39708701)
chr4 (124-215)||(21107124-21107215)
chr4 (100-227)||(53518370-53518497)
chr4 (179-272)||(1793649-1793742)
chr4 (80-157)||(35690359-35690436)
chr4 (103-235)||(53540401-53540533)
chr4 (179-231)||(20601695-20601747)
chr4 (126-231)||(20131032-20131137)
chr4 (182-235)||(48609787-48609840)
chr4 (82-194)||(28351649-28351761)
chr4 (115-214)||(2557732-2557831)
chr4 (80-223)||(26037556-26037699)
chr4 (179-234)||(46749734-46749789)
chr4 (80-162)||(1211502-1211584)
chr4 (105-209)||(20821073-20821176)
chr4 (179-227)||(37798038-37798086)
chr4 (179-227)||(40420261-40420309)
chr4 (109-149)||(45184256-45184296)
[»] chr5 (13 HSPs)
chr5 (78-227)||(27968-28117)
chr5 (105-227)||(32516669-32516790)
chr5 (82-145)||(8082083-8082146)
chr5 (120-183)||(29922412-29922475)
chr5 (17-227)||(38684992-38685202)
chr5 (121-224)||(6889122-6889225)
chr5 (17-164)||(16347488-16347635)
chr5 (103-202)||(29938226-29938321)
chr5 (185-227)||(42504294-42504336)
chr5 (82-158)||(1525734-1525810)
chr5 (131-227)||(14667910-14668006)
chr5 (100-204)||(15168879-15168983)
chr5 (179-235)||(20367080-20367136)
[»] chr3 (20 HSPs)
chr3 (16-260)||(26490339-26490583)
chr3 (80-227)||(45289138-45289285)
chr3 (16-164)||(39235162-39235310)
chr3 (80-227)||(48508323-48508470)
chr3 (46-227)||(19676128-19676308)
chr3 (173-238)||(55384054-55384119)
chr3 (82-227)||(39600728-39600873)
chr3 (82-238)||(23534606-23534762)
chr3 (121-227)||(54365022-54365128)
chr3 (16-137)||(49503691-49503812)
chr3 (80-156)||(38430936-38431012)
chr3 (16-143)||(19757924-19758050)
chr3 (16-143)||(48734266-48734393)
chr3 (80-224)||(48953469-48953615)
chr3 (80-195)||(50960716-50960831)
chr3 (185-227)||(39208801-39208843)
chr3 (153-222)||(48777312-48777381)
chr3 (179-227)||(40106667-40106715)
chr3 (123-223)||(40116519-40116619)
chr3 (82-146)||(44571529-44571593)
[»] chr2 (12 HSPs)
chr2 (120-227)||(43573177-43573283)
chr2 (79-271)||(13149418-13149611)
chr2 (82-215)||(12141634-12141767)
chr2 (82-227)||(18959001-18959146)
chr2 (82-156)||(19235102-19235176)
chr2 (114-227)||(45543120-45543232)
chr2 (100-228)||(11744631-11744759)
chr2 (78-139)||(32443751-32443812)
chr2 (82-227)||(38435042-38435187)
chr2 (179-227)||(9496053-9496101)
chr2 (126-238)||(21834688-21834800)
chr2 (189-233)||(42149701-42149745)
[»] scaffold0045 (1 HSPs)
scaffold0045 (180-239)||(86644-86703)
[»] scaffold0024 (1 HSPs)
scaffold0024 (179-227)||(82905-82953)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 29735834 - 29736160
Alignment:
Q  19 gtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagag 118  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29735834 gtagaaaatatgtttaggtagtttcgacatgtacagagaataccgatagatgctataatacgaagagtggatcagatagacgagagtcagatcagaagag 29735933  T
Q  119 atagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29735934 atagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacg 29736033  T
Q  219 taatttgattcatatagtcggtcatacttagtgagataagaccttgttgttgtatcgttaggaaacaaacnnnnnnnctctcatttaataccaataattg 318  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  29736034 taatttgattcatgtagtcggtcatacttagtgagagaagaccttgttgttgtatcgttaggaaacaaactttttttctctcatttaataccaataattg 29736133  T
Q  319 taagagcaattatgaaatactaacaca 345  Q
    |||| | ||||||||||||||||||||    
T  29736134 taagggtaattatgaaatactaacaca 29736160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 271
Target Start/End: Complemental strand, 35914826 - 35914604
Alignment:
Q  49 gtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaa 148  Q
    |||||||||| | | ||||||  |||| || | ||||| | |||||| || || |||||||||   ||||| |||||||||  ||||||||||||||||     
T  35914826 gtagagagaagacctatagattttatagcaaggagagtaggtcagatggaggatagtcagatccctagagacagaggaagacatagaaaaactataagag 35914727  T
Q  149 aagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcggtcatactta 248  Q
    || ||||||| |||||||| | ||||||  ||||| | | ||||||| |||||||| |||| ||||| ||||||||||| ||| |||  |  |  |||||    
T  35914726 aaactattaggaaagacttgaagattaatgagttggaccaaaatatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccactta 35914627  T
Q  249 gtgagataagaccttgttgttgt 271  Q
    |||||||||||| | ||||||||    
T  35914626 gtgagataagacttggttgttgt 35914604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 30559785 - 30559928
Alignment:
Q  84 agtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttg 183  Q
    |||||||||||| || || |||| |||||  ||||||||| |||||  || ||||||||||||| || |||| || ||||| |||  ||||||  |||||    
T  30559785 agtggatcagatggaggatagtcggatcactagagatagatgaagacttaaaaaaactataagagaaactatcaggaaagatttagagattaatgagttg 30559884  T
Q  184 aatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
     ||||| ||||| |||||||| |||| |||||||||||||||||    
T  30559885 gatccatatatggtttatgatagaacattatgacgtaatttgat 30559928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 45419323 - 45419406
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaag 163  Q
    ||||||| |||||||| || |||||||||||| |||||| |||||||||| ||||||||||||||||| || ||||||| ||||    
T  45419323 gaagagtagatcagatggaggagagtcagatctgaagaggtagaggaagacctagaaaaactataagagaaactattaggaaag 45419406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 29520740 - 29520884
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| |||||||| || || ||||| |||| ||||| |||||||||  ||||||||||||||||| || || |||| || || |||  ||||||  |||    
T  29520740 agagtagatcagatggaggatagtcaaatcacaagaggtagaggaagc-ctagaaaaactataagagaaactgttaggaacgatttagagattaatgagt 29520838  T
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    || ||||||||||| |||||||| |||| ||||| |||||||||||    
T  29520839 tggatccaaatatggtttatgatagaacattatggcgtaatttgat 29520884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 13589600 - 13589686
Alignment:
Q  113 gaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgattt 199  Q
    |||||| |||| |||||  |||||||||||||||| || ||||||||||||| |||| ||||||  ||||||||| |||||||||||    
T  13589600 gaagaggtagatgaagacttagaaaaactataagagaaactattagaaaagatttaaagattaatgagttgaatcaaaatatgattt 13589686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 5908758 - 5908890
Alignment:
Q  104 gtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatga 203  Q
    |||||||||  ||||| | ||||||| ||||||||||||||||| || |||||| ||||||   || ||||||  ||||| ||| |||||||||||||||    
T  5908758 gtcagatcactagagacataggaagacctagaaaaactataagagaaactattaaaaaagatccaaggattaatgagttggatcaaaatatgatttatga 5908857  T
Q  204 ttgaactttatgacgtaatttgattcatatagt 236  Q
    | |||| ||||  ||||||| ||| ||| ||||    
T  5908858 tagaaccttattgcgtaattggatccatgtagt 5908890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 18125294 - 18125384
Alignment:
Q  114 aagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgat 204  Q
    ||||| |||||| ||| ||||||||||||| ||| || | ||||||||||| ||||   | ||  ||||| ||||||||||||||||||||    
T  18125294 aagaggtagagggagacctagaaaaactattagagaaaccattagaaaagatttaaaagtcaatgagttggatccaaatatgatttatgat 18125384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 26905100 - 26904943
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| ||||| || || ||||||||||| | ||||| |||||| ||| |||| |||||||| ||| || | ||||||||||| |||  | | || ||    
T  26905100 gaagagtagatcaaatggaagagagtcagataaaaagaggtagagggagacctaggaaaactattagagaaaccattagaaaagatttagaggtcaataa 26905001  T
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcg 238  Q
    |||| | ||||||||  ||||| ||  |||  |||| ||||||||||| ||||||||||    
T  26905000 gttgga-ccaaatatagtttataataaaacactatgtcgtaatttgatccatatagtcg 26904943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 28169514 - 28169604
Alignment:
Q  114 aagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgat 204  Q
    ||||| |||||||||| ||| ||||||||||||| || ||||||| ||||| ||   ||||||  ||||| || |||||||| ||||||||    
T  28169514 aagaggtagaggaagacctaaaaaaactataagagaaactattaggaaagattttgagattaatgagttggattcaaatatggtttatgat 28169604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 39946977 - 39947091
Alignment:
Q  112 agaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactt 211  Q
    ||||||| ||||||| || ||||||||||||| ||| || | ||||||||||| |||  | | ||  |||||||||||||| || |||||||| ||||      
T  39946977 agaagaggtagaggacgacctagaaaaactattagagaaaccattagaaaagatttagaggtcaatgagttgaatccaaatttggtttatgatagaacgc 39947076  T
Q  212 tatgacgtaatttga 226  Q
    |||| ||| ||||||    
T  39947077 tatggcgtcatttga 39947091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 42584552 - 42584594
Alignment:
Q  185 atccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||||||||| |||||||| |||| |||||||||||||||||    
T  42584552 atccaaatatggtttatgatagaacattatgacgtaatttgat 42584594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 45512648 - 45512602
Alignment:
Q  121 agaggaagatctagaaaaactataagaaaagctattagaaaagactt 167  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||||    
T  45512648 agaggaagacctagaaaaactataagagaaactattaggaaagactt 45512602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 4955388 - 4955457
Alignment:
Q  189 aaatatgatttatgattgaactttatgacgtaatttgattcatatagtcggtcatacttagtgagataag 258  Q
    ||||||||||||| ||  ||| ||| |||||||||||||| || |||||| ||  |||||||||||||||    
T  4955388 aaatatgatttataataaaacattacgacgtaatttgatttatgtagtcgatctcacttagtgagataag 4955457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 490522 - 490570
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||| ||||||||||| |||||||| |||| ||||| |||||||||||    
T  490522 agttggatccaaatatggtttatgatagaacattatggcgtaatttgat 490570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 16035822 - 16035770
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcat 231  Q
    ||||| ||| ||||||| |||||| | |||| |||||||||||||||||||||    
T  16035822 agttggatcgaaatatggtttatggtagaacattatgacgtaatttgattcat 16035770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 9593964 - 9593749
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||||||||||| | |||||| |||| | ||||||||||||| |    |||||||| ||  | ||||||| |||||||| || |||||||| |||  ||    
T  9593964 atggtagaaaataggcttaggtggtttgggcatgtagagagaagacatgtagatgctgtagtaagaagagtagatcagatggaggagagtcaaatc--aa 9593867  T
Q  116 gagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatg 215  Q
    ||| |||||||||| ||||||||| ||||||| || ||||||| |||||||||  ||||||  ||||| |||| |||||| |||||||| |||| |||||    
T  9593866 gaggtagaggaagacctagaaaaattataagagaaactattaggaaagacttagagattaatgagttggatcccaatatggtttatgatagaacattatg 9593767  T
Q  216 acgtaatttgattcatatag 235  Q
      |||||||||| |||||||    
T  9593766 --gtaatttgatccatatag 9593749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 5095930 - 5096069
Alignment:
Q  88 gatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatc 187  Q
    |||||||| || |||||| |||||||||||| |||||||||| |||||||||||| |||| || || |||| ||||| ||| || ||||  ||||| |||    
T  5095930 gatcagatggaagagagttagatcagaagaggtagaggaagacctagaaaaactagaagagaaactcttaggaaagatttagtggttaatgagttggatc 5096029  T
Q  188 caaatatgatttatgattgaactttatgacgtaatttgat 227  Q
     ||||||| |||||||| |||| ||||| |||||||||||    
T  5096030 aaaatatggtttatgatagaacattatggcgtaatttgat 5096069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 28027083 - 28026951
Alignment:
Q  17 tggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaag 116  Q
    |||||||||||| | || ||| |||| |||||||||||| || | |  |||||||  ||  |||||||||  ||||||| || ||||||||||| |||||    
T  28027083 tggtagaaaataggctt-ggtggtttggacatgtagagataacacctgtagatgcggtagtacgaagagtatatcagatggaggagagtcagattagaag 28026985  T
Q  117 agatagaggaagatctagaaaaactataagaaaa 150  Q
    || |||||||||| ||| ||||||||||||||||    
T  28026984 aggtagaggaagacctaaaaaaactataagaaaa 28026951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 34658 - 34552
Alignment:
Q  121 agaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgta 220  Q
    ||||||||| ||||||||||||||||| || | ||||  |||||  ||| ||||||  ||||| ||  ||||||| |||||||| |||| ||||| ||||    
T  34658 agaggaagacctagaaaaactataagagaaaccattaagaaagatctaaagattaatgagttggattgaaatatggtttatgatagaacattatggcgta 34559  T
Q  221 atttgat 227  Q
    |||||||    
T  34558 atttgat 34552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 33497081 - 33497201
Alignment:
Q  114 aagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaacttta 213  Q
    ||||| |||||| ||||||||||||||||| ||| || |  ||||||| || |||| | | ||  ||||| ||||||||||||||||||||  |||  ||    
T  33497081 aagaggtagagggagatctagaaaaactattagagaaacctttagaaaggatttaaaggtcaatgagttggatccaaatatgatttatgatataacacta 33497180  T
Q  214 tgacgtaatttgattcatata 234  Q
    |  ||||||||||| ||||||    
T  33497181 tagcgtaatttgatccatata 33497201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 12890663 - 12890810
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| |||||||| || |||||| || ||| ||||| |||| ||||| |||| |||||||||||| || | |||||||| || |||    | ||  |    
T  12890663 gaagagtagatcagatggaggagagtaaggtcaaaagaggtagatgaagacctaggaaaactataagagaaaccattagaaaggatttagacgtcaatga 12890762  T
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||  ||||||||||| |||||||| ||||  |||| |||||||||||    
T  12890763 gttagatccaaatatggtttatgatagaacactatggcgtaatttgat 12890810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 9568817 - 9568942
Alignment:
Q  117 agatagaggaagatctagaaaaactataagaaaagctattagaaaagactta-at------gattaacaagttgaatccaaatatgatttatgattgaac 209  Q
    ||||||| |||||||||||| |||||||||| || ||||||| ||||| ||| ||      |||||   ||||| ||||||||||| |||||||| || |    
T  9568817 agatagatgaagatctagaacaactataagagaaactattaggaaagatttagattttagagattattgagttggatccaaatatggtttatgatagacc 9568916  T
Q  210 tttatgacgtaatttgattcatatag 235  Q
     ||||| ||||||||||| |||||||    
T  9568917 gttatggcgtaatttgatccatatag 9568942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 31818664 - 31818766
Alignment:
Q  125 gaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaattt 224  Q
    ||||| ||||||||||||||||| || ||||||| ||||  ||   ||||||  ||||| ||| || |||| |||||||| |||| ||||| ||||||||    
T  31818664 gaagacctagaaaaactataagagaaactattaggaaaggtttggagattaatgagttggatcaaagtatggtttatgatagaacattatgtcgtaattt 31818763  T
Q  225 gat 227  Q
    |||    
T  31818764 gat 31818766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 3963889 - 3963953
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataag 146  Q
    |||||||||||||  || | |||||| ||||  |||| |||||||||| ||||||||||||||||    
T  3963889 agagtggatcagaaggaggggagtcaaatcaccagaggtagaggaagacctagaaaaactataag 3963953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 9509342 - 9509549
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    |||||| |||||| | ||||||||||| | ||||||||||||| | || || ||||| ||  ||  ||||| |||||||| || |||||||| || ||||    
T  9509342 atggtaaaaaataggcttaggtagtttgggcatgtagagagaagaccggtatatgctttagtacttagagtagatcagatggaggagagtcatattagaa 9509441  T
Q  116 gagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatg 215  Q
    ||| |||||||||| ||||||||||||||||| || ||||||| ||||| |||  |  |||  ||||  | ||||||||| ||||||||||||| |||||    
T  9509442 gaggtagaggaagacctagaaaaactataagataaactattaggaaagatttacagcctaatgagttagagccaaatatggtttatgattgaacattatg 9509541  T
Q  216 acgtaatt 223  Q
     |||||||    
T  9509542 gcgtaatt 9509549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 52561841 - 52561668
Alignment:
Q  22 gaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagagata 121  Q
    ||||||| | |||||| |||||| ||||||||||||| | ||||||||| |  |  ||||||||| |||||||| || |||||| |||| ||||||| ||    
T  52561841 gaaaataggcttaggtggtttcggcatgtagagagaagaccgatagatgttgcagtacgaagagtagatcagatggaggagagttagattagaagaggta 52561742  T
Q  122 gaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatg 195  Q
    ||||||||  |||||||||||||||| || || |||| ||||| |||  | ||||  ||||| |||||||||||    
T  52561741 gaggaagacttagaaaaactataagagaaactgttaggaaagatttagaggttaatgagttggatccaaatatg 52561668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 9599587 - 9599441
Alignment:
Q  81 aagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaag 180  Q
    |||||| |||||||| || ||||||||||||| ||||| |||||||||| |||||||||||| |||| || ||||||| ||| | |||  | ||||  ||    
T  9599587 aagagtagatcagatggaggagagtcagatcataagaggtagaggaagacctagaaaaactacaagagaaactattaggaaatatttagagtttaatgag 9599488  T
Q  181 ttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||  ||||| ||||| |||||||| |||| ||||| |||||||||||    
T  9599487 tttgatccagatatggtttatgatagaacgttatggcgtaatttgat 9599441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 16142154 - 16142018
Alignment:
Q  100 gagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgattt 199  Q
    |||||| |||||||||||| |||| || ||||| |||||||||||||| || | ||||||||||| |||  | |||| |||||  |||||| |||| |||    
T  16142154 gagagttagatcagaagagttagaagatgatctggaaaaactataagagaaaccattagaaaagatttagagtttaataagttagatccaattatggttt 16142055  T
Q  200 atgattgaactttatgacgtaatttgattcatatagt 236  Q
    ||||| ||||  |||||||||||||||| ||| ||||    
T  16142054 atgatcgaacaatatgacgtaatttgatccatgtagt 16142018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 27520346 - 27520243
Alignment:
Q  135 aaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatata 234  Q
    ||||||||||||| || ||||||||||| | |||  ||||||  || || |||||||||||||||||||| |||| |||||| |||||||||||||| ||    
T  27520346 aaaaactataagagaaactattagaaaaaatttagagattaatgagctggatccaaatatgatttatgatagaacattatgatgtaatttgattcatgta 27520247  T
Q  235 gtcg 238  Q
    ||||    
T  27520246 gtcg 27520243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 34827339 - 34827179
Alignment:
Q  39 gtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaa 138  Q
    |||| |||||||| |||||| | ||||||||||| ||  | ||| ||| ||| |||| || |||||| || | |||| | ||| ||||||| ||||||||    
T  34827339 gtttggacatgtaaagagaagaccgatagatgctctagtaagaaaagtagattagatggaggagagtaaggttagaaaaaataaaggaagacctagaaaa 34827240  T
Q  139 actataagaaaagctattagaaaagactta-atgattaacaagttgaatccaaatatgatt 198  Q
    ||||||||| || ||||||||||||| ||| | | ||||  ||||||||||||||||||||    
T  34827239 actataagagaaactattagaaaagatttagaggtttaatcagttgaatccaaatatgatt 34827179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 32404784 - 32404573
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||| ||||||| | |||||| |||| || |||||||||||| | |  ||||| |||||  | | ||||| ||  |||| || || ||||| |||| ||    
T  32404784 atggtggaaaataggcttaggtggtttggatatgtagagagaagacctgtagattctatagtaaggagagtagagaagatggaggatagtcatatcacaa 32404685  T
Q  116 gagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatg 215  Q
    ||| |||||||||| ||| ||||||||||||| || ||||||| ||||| |||  ||||||  |||| |||||||| ||| ||||||||  ||| | |||    
T  32404684 gaggtagaggaagacctacaaaaactataagagaaactattaggaaagatttagagattaatgagttaaatccaaacatggtttatgatataacataatg 32404585  T
Q  216 acgtaatttgat 227  Q
     |||||||||||    
T  32404584 gcgtaatttgat 32404573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 38807865 - 38807720
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| || ||||| || ||||||||||||| ||||| ||| |||||| |||  |||||||||||| || | |||||||| || |||  | | ||| |    
T  38807865 gaagagtagaccagatggaggagagtcagatcaaaagagctaggggaagacctaagaaaactataagagaaaccattagaaaggatttagaggtcaacga 38807766  T
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatttg 225  Q
    |||| ||||||||||| |||||||| ||||  |||| |||||||||    
T  38807765 gttggatccaaatatggtttatgatagaacactatggcgtaatttg 38807720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 29128922 - 29129006
Alignment:
Q  131 ctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatg 215  Q
    ||||||||||||||||| || ||||||| ||||| |||  | ||||||||||| ||||||||||| |||||||| |||| |||||    
T  29128922 ctagaaaaactataagagaaactattaggaaagatttagaggttaacaagttggatccaaatatggtttatgatagaacattatg 29129006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 36624066 - 36623995
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaag 151  Q
    ||||||| |||||||| || ||||||| ||||||||||| |||||||||| ||||| ||||||| |||||||    
T  36624066 gaagagtagatcagatggaggagagtcggatcagaagaggtagaggaagacctagagaaactattagaaaag 36623995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 39318225 - 39318364
Alignment:
Q  88 gatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatc 187  Q
    |||||||| || ||||||| | ||| ||||| |||||||||| |||| |||||||||||| || | |||||||| || |||  | | ||  ||||| |||    
T  39318225 gatcagatggaggagagtcgggtcaaaagaggtagaggaagacctaggaaaactataagagaaaccattagaaaggatttagaggtcaatgagttggatc 39318324  T
Q  188 caaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||||||| |||||||| ||||  |||| |||||||||||    
T  39318325 caaatatggtttatgatagaacactatggcgtaatttgat 39318364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 39140560 - 39140754
Alignment:
Q  32 ttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatc 131  Q
    |||||| |||| | ||||||||||||| | ||||| ||| | ||  ||||||||| |||||||| || ||||||||||| ||||||| ||||||||   |    
T  39140560 ttaggtggtttgggcatgtagagagaagaccgatacatgttgtagtacgaagagtagatcagatggatgagagtcagattagaagaggtagaggaa---c 39140656  T
Q  132 tagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcat 231  Q
    || ||||  ||| |||||  ||||||| ||| | |||  | ||||  ||||| ||||||||||| |||  ||| |||| ||||| |||||||||||||||    
T  39140657 taaaaaagttatgagaaa--ctattaggaaaaatttagaggttaattagttggatccaaatatggtttcagatagaacattatggcgtaatttgattcat 39140754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 256
Target Start/End: Complemental strand, 11941750 - 11941598
Alignment:
Q  104 gtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatga 203  Q
    |||||||||  | |||| |||||||| |||||||||| |||||| |||||||||||||||| |||  |||||   ||||| |||  | |||| |||||||    
T  11941750 gtcagatcactaaagatggaggaagacctagaaaaacaataagagaagctattagaaaagatttagagattattgagttggatcggagtatggtttatga 11941651  T
Q  204 ttgaactttatgacgtaatttgattcatatagtcggtcatacttagtgagata 256  Q
    |  ||| ||||| |||| |||||| ||| ||||||| |  |||||||| ||||    
T  11941650 taaaacattatggcgtattttgatccatgtagtcggcctcacttagtgggata 11941598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 52832135 - 52832289
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| ||| |||| || |||||||  || |||| || |||||||| | |||||||||| | |||| ||  |||||||||||| |||  | || | ||||    
T  52832135 agagtagataagatggaggagagtcgtattagaataggtagaggaatacctagaaaaaccaaaagagaaagtattagaaaagatttagaggttgataagt 52832234  T
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagt 236  Q
    ||||| |||||||  |||  ||| |||| ||||||||||||||||| ||||||||    
T  52832235 tgaatacaaatattgtttcagatagaacattatgacgtaatttgatccatatagt 52832289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 27848063 - 27847950
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||||||||||| | |||||| |||| | |||| |||||||| | |  |||||||| ||  | |||||||  ||||||| || ||||||||| ||||||    
T  27848063 atggtagaaaataagcttaggtggtttgggcatgcagagagaagacctgtagatgctgtagtatgaagagtatatcagatggaggagagtcagctcagaa 27847964  T
Q  116 gagatagaggaaga 129  Q
    ||| ||||||||||    
T  27847963 gaggtagaggaaga 27847950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 3819015 - 3818915
Alignment:
Q  115 agagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttat 214  Q
    ||||| ||||||||| || |||||||||||||| || ||||||  ||||| |||  ||||||  ||||||||  ||||||| |||||||| |||| ||||    
T  3819015 agagaaagaggaagaccttgaaaaactataagagaaactattaagaaagatttagagattaatgagttgaatagaaatatggtttatgatggaacattat 3818916  T
Q  215 g 215  Q
    |    
T  3818915 g 3818915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 12930406 - 12930358
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||| |||||||||||||||||||| |||  |||||||||||||||||    
T  12930406 agttggatccaaatatgatttatgatagaagattatgacgtaatttgat 12930358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 41560357 - 41560464
Alignment:
Q  120 tagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgt 219  Q
    |||| ||||| |||||||| |||||||| || ||||||| | | | |||  ||||||  ||||| |||||||||||  ||||||| |||| ||||| |||    
T  41560357 tagaagaagacctagaaaagctataagagaaactattaggatacatttagagattaatgagttggatccaaatatgggttatgatagaacattatggcgt 41560456  T
Q  220 aatttgat 227  Q
    ||||||||    
T  41560457 aatttgat 41560464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 7762580 - 7762483
Alignment:
Q  131 ctagaaaaactataagaaaagctattagaaaagactta-atgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgatt 228  Q
    ||||||||||||||||| || ||||||||||||| ||| ||| ||||  ||||| ||| ||||||| ||||| || |||| |||||  |||||||||||    
T  7762580 ctagaaaaactataagagaaactattagaaaagatttagatg-ttaatgagttggatctaaatatggtttataatagaacattatggtgtaatttgatt 7762483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 28090783 - 28090697
Alignment:
Q  185 atccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcggtcatacttagtgagataagaccttgttgttgt 271  Q
    ||||||||||| |||||||| |||| ||||| ||||||||||| ||| ||| ||  |  |||||||| |||||||| | ||||||||    
T  28090783 atccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagacttggttgttgt 28090697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 40416461 - 40416594
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| ||||||||  | || ||||||||||  | ||| ||| ||||| ||||||||||||||||| || ||||||  |||||  ||  ||||||  |||    
T  40416461 agagtagatcagatgcaggatagtcagatcaccaaagacagaagaagacctagaaaaactataagacaaactattaagaaagatctatagattaatgagt 40416560  T
Q  182 tgaatccaaatatgatttatgattgaactttatg 215  Q
    || ||| ||||||| |||||||| |||| |||||    
T  40416561 tggatcgaaatatggtttatgatagaacattatg 40416594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 52739606 - 52739553
Alignment:
Q  179 agttgaatccaaatatgatttat-gattgaactttatgacgtaatttgattcat 231  Q
    |||||||||||||||| |||||| ||| |||| ||||||| |||||||||||||    
T  52739606 agttgaatccaaatataatttatggatagaacattatgacttaatttgattcat 52739553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 52878471 - 52878342
Alignment:
Q  102 gagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttat 201  Q
    ||||||| ||| ||||| || |||||||  ||| |||| |||||||  |  ||||| |||||| |||  | ||||  |||||||||||| || |||||||    
T  52878471 gagtcaggtcataagaggtataggaagacttaggaaaattataagagtaattattataaaagatttagaggttaatgagttgaatccaactacgatttat 52878372  T
Q  202 gattgaactttatgacgtaatttgattcat 231  Q
    ||| |||||||||   ||||||||||||||    
T  52878371 gatagaactttatagtgtaatttgattcat 52878342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 8343040 - 8343008
Alignment:
Q  115 agagatagaggaagatctagaaaaactataaga 147  Q
    ||||||||||||||| |||||||||||||||||    
T  8343040 agagatagaggaagacctagaaaaactataaga 8343008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 18469345 - 18469209
Alignment:
Q  11 agaaaatggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagat 110  Q
    |||| ||| ||||||||| | ||||||||||| ||||| ||| ||||| |  | |||||| | ||  |||||||||  ||||||| ||  |||||| |||    
T  18469345 agaagatgatagaaaataggattaggtagtttggacatatagtgagaagactggtagatgttgtagtacgaagagtaaatcagatggagaagagtcggat 18469246  T
Q  111 cagaagagatagaggaagatctagaaaaactataaga 147  Q
    || ||||| |||| |||||  |||||||| |||||||    
T  18469245 caaaagaggtagatgaagacttagaaaaattataaga 18469209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 36136788 - 36137000
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    |||||||||||||   |||||| |||| | ||| ||||||||||| | ||||||| | ||  ||||||||  |||||||| || ||||||||||||||||    
T  36136788 atggtagaaaatagtcttaggttgtttgggcatatagagagaatacctatagatgttgtagtacgaagagcagatcagatggaggagagtcagatcagaa 36136887  T
Q  116 gagatagaggaagatctagaaaaactataagaaaagctattagaaaagactta-atgattaacaagttgaatccaaatatgatttatgattgaactttat 214  Q
    ||  |||||||||| ||||||||||||||||| || ||||| | ||||| ||| ||| ||||  | ||| ||||||||||| |||||||| |||| ||||    
T  36136888 gaagtagaggaagacctagaaaaactataagagaaactatttggaaagatttagatg-ttaatgaattggatccaaatatggtttatgatagaacattat 36136986  T
Q  215 gacgtaatttgatt 228  Q
       |||||||||||    
T  36136987 agggtaatttgatt 36137000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 21517529 - 21517427
Alignment:
Q  125 gaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaattt 224  Q
    ||||| ||||||||||||||||| || |||||| |||| | |||  |||||| |||||| ||||||||||||||||||||  ||| ||||||||||||||    
T  21517529 gaagacctagaaaaactataagagaaactattaaaaaatatttagagattaataagttggatccaaatatgatttatgatataacattatgacgtaattt 21517430  T
Q  225 gat 227  Q
    |||    
T  21517429 gat 21517427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 28628125 - 28627980
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| |||| ||| || || ||||| |||| ||||| |||||||||| ||||||||||||||||| || ||||||| ||||| |||  ||||||  |||    
T  28628125 agagtagatccgatggaggatagtcaaatcacaagaggtagaggaagacctagaaaaactataagagaaactattaggaaagatttagagattaatgagt 28628026  T
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    || || ||||| || |||||||| |||| ||||| |||||||||||    
T  28628025 tggatgcaaatgtggtttatgatagaacattatggcgtaatttgat 28627980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 36239938 - 36239843
Alignment:
Q  132 tagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||||||||||||||| || ||||||| ||| | |||  ||||||| ||||| ||||||||||| |||||||| |||| ||||| |||||||||||    
T  36239938 tagaaaaactataagagaaactattaggaaaaatttagagattaacgagttggatccaaatatgctttatgatagaacattatggcgtaatttgat 36239843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 2885979 - 2885769
Alignment:
Q  17 tggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaag 116  Q
    |||||||||||| | |||| | |||| | ||||||||||||| | |  |||||||  |   ||||||||| |||||||| || ||||||||| ||| |||    
T  2885979 tggtagaaaataggcttagatggtttgggcatgtagagagaagatccgtagatgccgttgtacgaagagtagatcagatggaggagagtcaggtcaaaag 2885880  T
Q  117 agatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatga 216  Q
    || |||| ||||| |||| |||||||||||| || | |||||||| || ||| || | ||  ||||| | ||||||||| |||||||| ||||  ||||     
T  2885879 aggtagaagaagacctaggaaaactataagagaaaccattagaaatgatttagtggtcaatgagttggacccaaatatggtttatgatagaacactatgg 2885780  T
Q  217 cgtaatttgat 227  Q
     ||||||||||    
T  2885779 tgtaatttgat 2885769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 40980088 - 40979975
Alignment:
Q  114 aagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaacttta 213  Q
    ||||| |||||||||| |||| |||||||||||| || ||||||||||||| |||  | | ||  ||||| ||||||||||| |||||||| ||||  ||    
T  40980088 aagaggtagaggaagacctaggaaaactataagagaaactattagaaaagatttagaggtcaatgagttggatccaaatatggtttatgatagaacacta 40979989  T
Q  214 tgacgtaatttgat 227  Q
    || |||||||||||    
T  40979988 tggcgtaatttgat 40979975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 1011133 - 1011194
Alignment:
Q  78 acgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaa 139  Q
    ||||||||| ||||||||| | ||||||||||||| ||||| |||||||||| |||||||||    
T  1011133 acgaagagtagatcagataaaggagagtcagatcaaaagaggtagaggaagacctagaaaaa 1011194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 7189414 - 7189329
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagct-attagaaaaga 164  Q
    ||||||| |||||||| || |||||||| || ||||||  |||||||||| ||||||||||||||||  ||||| |||||||||||    
T  7189414 gaagagtagatcagatggaggagagtcatattagaagatgtagaggaagacctagaaaaactataagggaagctaattagaaaaga 7189329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 9210871 - 9210751
Alignment:
Q  107 agatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattg 206  Q
    |||||||||||| | |||||||| |||| |||||||||||| || || |||| ||| | |||  | ||||  ||||| ||||||||||| ||||||||      
T  9210871 agatcagaagaggttgaggaagacctaggaaaactataagagaaacttttaggaaaaatttagaggttaatgagttggatccaaatatggtttatgatac 9210772  T
Q  207 aactttatgacgtaatttgat 227  Q
    ||| ||||| |||||||||||    
T  9210771 aacattatggcgtaatttgat 9210751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 35922362 - 35922495
Alignment:
Q  100 gagagtcagatcagaagagatagaggaagatctagaaaaa-ctataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatt 198  Q
    |||||| |||||||||||| ||||||||||  || ||||| || | |||||  ||||||  ||||| |||  | ||||  ||||||||| ||||||||||    
T  35922362 gagagttagatcagaagaggtagaggaagacttaaaaaaaactttgagaaa--ctattaagaaagatttagaggttaatgagttgaatctaaatatgatt 35922459  T
Q  199 tatgattgaactttatgacgtaatttgattcatata 234  Q
    |||||| |||| ||||||| ||||||||| ||||||    
T  35922460 tatgatagaacattatgacctaatttgatccatata 35922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 44401294 - 44401174
Alignment:
Q  105 tcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgat 204  Q
    ||||||||  |||| | ||||| || ||||||||| ||||||| || ||||||  ||||| |||  ||||||| ||||  ||| ||||||| ||||||||    
T  44401294 tcagatcactagaggtggaggatgacctagaaaaattataagagaaactattaagaaagatttagagattaacgagtt--atcaaaatatgttttatgat 44401197  T
Q  205 tgaactttatgacgtaatttgat 227  Q
     |||| |||||||||||||||||    
T  44401196 agaacattatgacgtaatttgat 44401174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 1531557 - 1531489
Alignment:
Q  78 acgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataag 146  Q
    ||||| ||| ||||||||| | ||||| ||||||| ||||| |||||||||| ||| ||||||||||||    
T  1531557 acgaatagtagatcagataaaggagagccagatcaaaagaggtagaggaagacctaaaaaaactataag 1531489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 45601599 - 45601711
Alignment:
Q  115 agagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttat 214  Q
    |||| |||||||||| ||||||||||||||||| || | ||||  |||||  ||  ||||||  ||||| ||| |||||||||||||||| ||||  |||    
T  45601599 agaggtagaggaagacctagaaaaactataagagaaaccattaagaaagatctagagattaatgagttggatcaaaatatgatttatgatagaacactat 45601698  T
Q  215 gacgtaatttgat 227  Q
    |  ||||||||||    
T  45601699 ggtgtaatttgat 45601711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 38135399 - 38135260
Alignment:
Q  88 gatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatc 187  Q
    |||||||| || || ||||||||||  ||||  ||| ||||| ||||||||| ||||||| || |||||| |||||| |||  ||||||  ||||| | |    
T  38135399 gatcagatggaggatagtcagatcattagaggcagatgaagacctagaaaaagtataagagaaactattaaaaaagatttagagattaatgagttggacc 38135300  T
Q  188 caaatatgatttatgattgaactttatgacgtaatttgat 227  Q
     |||||||  ||||||| |||  ||||| |||||||||||    
T  38135299 gaaatatgggttatgatagaatattatggcgtaatttgat 38135260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 36101872 - 36101815
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagt 236  Q
    ||||| ||| ||||||| |||||||| |||| ||||||||||||||||| ||| ||||    
T  36101872 agttggatcaaaatatggtttatgatagaacattatgacgtaatttgatccatgtagt 36101815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 13859265 - 13859121
Alignment:
Q  17 tggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaag 116  Q
    |||||||||||| | |||| | |||| | ||||||||||||| | |  |||||||| |   | ||||||| ||||| || || ||||||||  | |||||    
T  13859265 tggtagaaaataggcttagatggtttgggcatgtagagagaagacccgtagatgctgtcgtaagaagagtagatcaaatggaggagagtcaagttagaag 13859166  T
Q  117 agatagaggaagatctagaaaaactataagaaaagctattagaaa 161  Q
    || |||||||||| |||| |||||||| ||| || | ||||||||    
T  13859165 aggtagaggaagacctaggaaaactattagagaaaccattagaaa 13859121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 46973653 - 46973729
Alignment:
Q  47 atgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagagataga 123  Q
    |||||||||||| | ||||||||||||||| |  ||||||| || |||| || || ||||||||||  |||||||||    
T  46973653 atgtagagagaagaccgatagatgctataataacaagagtgaattagatggaggatagtcagatcaccagagataga 46973729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 51421758 - 51421965
Alignment:
Q  20 tagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagaga 119  Q
    ||||||||| | |||||| |||| | ||| || |||||| | || |||||| | ||| ||||||||| ||||| || || |   ||||||||| |||||     
T  51421758 tagaaaataggcttaggtggtttgggcatatacagagaagaccggtagatgttgtaatacgaagagtagatcaaatggaggtttgtcagatcaaaagagg 51421857  T
Q  120 tagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgt 219  Q
    ||||||||||| |||||||||||||||| || ||||||| ||||| |||  | ||||  | ||| ||||||| ||| |||||||| |||| |||||||||    
T  51421858 tagaggaagatttagaaaaactataagagaaactattaggaaagatttagaggttaatgaattggatccaaaaatggtttatgatagaacattatgacgt 51421957  T
Q  220 aatttgat 227  Q
    ||||||||    
T  51421958 aatttgat 51421965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 45205034 - 45204887
Alignment:
Q  78 acgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaac 177  Q
    ||||||||| |||||||| || ||||| ||||||| ||||| | |||||||| ||||||||||||||||| || ||||||| ||||| |||  | ||||     
T  45205034 acgaagagtagatcagatggaggagag-cagatcaaaagaggtggaggaagacctagaaaaactataagagaaactattaggaaagatttagagtttaat 45204936  T
Q  178 aagttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||||| ||||||||||| |||||||| |||| ||| | |||||||||||    
T  45204935 aagttggatccaaatatggtttatgatagaacatta-ggcgtaatttgat 45204887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 260
Target Start/End: Original strand, 39708521 - 39708701
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| |||||||| || ||||||||| ||| ||||| |||||||||| |||| |||||||||||| || | |||||||| || |||  | | ||  |    
T  39708521 gaagagtagatcagatggaggagagtcaggtcaaaagaggtagaggaagacctaggaaaactataagagaaaccattagaaaggatttagaggtcaatga 39708620  T
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcggtcatacttagtgagataagac 260  Q
    |||| ||||||||||| |||||||| ||||  |||| ||||||||||| ||| ||||||  |  |||||||| ||||||||    
T  39708621 gttggatccaaatatggtttatgatagaacactatgtcgtaatttgatccatgtagtcgaccccacttagtgggataagac 39708701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 21107124 - 21107215
Alignment:
Q  124 ggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatg 215  Q
    |||||| ||||||||||||||||| || ||||||| ||||  ||| |||||||  ||||| ||||||||||| |||||||| ||||||||||    
T  21107124 ggaagacctagaaaaactataagagaaactattaggaaagttttagtgattaattagttggatccaaatatggtttatgatagaactttatg 21107215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 53518497 - 53518370
Alignment:
Q  100 gagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgattt 199  Q
    |||||||| |||||||||| |||||||||  ||||||||||||| |||||| ||| ||| ||||| |||  | ||||  ||||| ||| ||||||| |||    
T  53518497 gagagtcaaatcagaagaggtagaggaaggcctagaaaaactatgagaaaaactaataggaaagatttagaggttaatgagttggatctaaatatggttt 53518398  T
Q  200 atgattgaactttatgacgtaatttgat 227  Q
    ||||| ||||  |||| |||||||||||    
T  53518397 atgatagaacactatggcgtaatttgat 53518370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 1793649 - 1793742
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcggtcatacttagtgagataagaccttgttgttgta 272  Q
    ||||| |||||||||||||||||||| || |  |||||||||||||||||||| ||| || ||  ||||||||||||||| | | |||||||||    
T  1793649 agttggatccaaatatgatttatgatagagcactatgacgtaatttgattcatgtagccgatctcacttagtgagataaggcttagttgttgta 1793742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 35690359 - 35690436
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctatta 157  Q
    ||||||||||| |||| || || |||||||||| ||||| |||||||||| ||||||||||||||||| || ||||||    
T  35690359 gaagagtggattagatggaggaaagtcagatcaaaagaggtagaggaagacctagaaaaactataagagaaactatta 35690436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 53540401 - 53540533
Alignment:
Q  103 agtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatg 202  Q
    ||||||||||  ||||  ||||||||| ||||||||||||||||| || ||||||| ||||||||   ||||||  ||||| |   ||||||| ||||||    
T  53540401 agtcagatcactagaggcagaggaagacctagaaaaactataagataaactattaggaaagacttggagattaatgagttggacaaaaatatggtttatg 53540500  T
Q  203 attgaactttatgacgtaatttgattcatatag 235  Q
    || |||| ||||| | ||||||||| |||||||    
T  53540501 atagaacattatggcataatttgatccatatag 53540533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 20601747 - 20601695
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcat 231  Q
    ||||| || ||||||||||||||||| |||| |||||||||||||||||||||    
T  20601747 agttggattcaaatatgatttatgatagaacattatgacgtaatttgattcat 20601695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 20131137 - 20131032
Alignment:
Q  126 aagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttg 225  Q
    |||||||||||||||||||||| ||  ||||| |||| | |||| | ||||  |||| |||| |||||||||||||||| |||| | || |  |||||||    
T  20131137 aagatctagaaaaactataagataaattattataaaataattaaaggttaatgagtttaatctaaatatgatttatgatagaacataataagataatttg 20131038  T
Q  226 attcat 231  Q
    ||||||    
T  20131037 attcat 20131032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 48609787 - 48609840
Alignment:
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatag 235  Q
    ||||| ||||||||||||||| |||||| ||||||  |||||||||||||||||    
T  48609787 tgaatacaaatatgatttatgcttgaacattatgatataatttgattcatatag 48609840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 28351649 - 28351761
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| |||||||| || || |||||||| | ||||| ||||| |||| ||||||||||||||||| || ||||||  ||||| |||  |||||   |||    
T  28351649 agagtagatcagatggaggatagtcagattacaagaggtagagaaagacctagaaaaactataagagaaactattacgaaagatttagagattattgagt 28351748  T
Q  182 tgaatccaaatat 194  Q
    || ||||||||||    
T  28351749 tggatccaaatat 28351761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 2557831 - 2557732
Alignment:
Q  115 agagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttat 214  Q
    |||| |||||||||||||||||||||| ||||| || ||||||  || ||  | | ||||||| ||||| ||| ||||||| |||||||| |||| ||||    
T  2557831 agaggtagaggaagatctagaaaaactgtaagagaaactattaagaaggatctgaagattaacgagttggatcgaaatatggtttatgatagaacattat 2557732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 26037699 - 26037556
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| |||||||| || ||||||||| | | |||||  ||||||| | |||| ||||| |||||| || ||||||| ||||| |||  | | ||  |    
T  26037699 gaagagtagatcagatggaggagagtcaggttaaaagaggcagaggaaaacctaggaaaaccataagagaaactattaggaaagatttagaggtgaatga 26037600  T
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatt 223  Q
    |||| ||||||||||| |||||||| ||||  |||| |||||||    
T  26037599 gttggatccaaatatggtttatgatagaacactatggcgtaatt 26037556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 46749734 - 46749789
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatata 234  Q
    ||||| || |||||||||||||||||  ||  ||||||||||||||||||||||||    
T  46749734 agttggattcaaatatgatttatgataaaatattatgacgtaatttgattcatata 46749789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 1211584 - 1211502
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaa 162  Q
    ||||||| |||||||| ||  |||||| ||||| ||||||||||||||||  ||| | |||||||||| ||  ||||||||||    
T  1211584 gaagagtagatcagatggagtagagtcggatcaaaagagatagaggaagacataggagaactataagataaattattagaaaa 1211502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 20821176 - 20821073
Alignment:
Q  105 tcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgat 204  Q
    |||||||| ||||| |||| ||||| |||| |||||||||||| || | |||||||| || |||| | | ||  ||||| || |||||||||||||||||    
T  20821176 tcagatcaaaagaggtagatgaagacctaggaaaactataagagaaac-attagaaaggatttaaaggtcaatgagttggattcaaatatgatttatgat 20821078  T
Q  205 tgaac 209  Q
     ||||    
T  20821077 agaac 20821073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 37798038 - 37798086
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||||||||||||||| |||||||| ||||  |||||||| |||||||    
T  37798038 agttgaatccaaatatggtttatgatagaacaatatgacgtcatttgat 37798086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 40420309 - 40420261
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||||||||| |||||| |||||||| |||| ||| |||||||||||||    
T  40420309 agttgaatcctaatatggtttatgatagaacattacgacgtaatttgat 40420261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 45184296 - 45184256
Alignment:
Q  109 atcagaagagatagaggaagatctagaaaaactataagaaa 149  Q
    |||| ||||| |||||||||| |||||||||||||||||||    
T  45184296 atcacaagaggtagaggaagacctagaaaaactataagaaa 45184256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 27968 - 28117
Alignment:
Q  78 acgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaac 177  Q
    ||||||||| ||||||||    ||||||||||||| ||||| | |||||||| ||||||||||||||||| || ||||||| ||||| |||  | ||||     
T  27968 acgaagagtagatcagatgcgtgagagtcagatcaaaagaggttgaggaagacctagaaaaactataagagaaactattaggaaagatttagaggttaat 28067  T
Q  178 aagttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||||| ||||||||||||||| |||| ||||  |||| | |||||||||    
T  28068 aagttggatccaaatatgatttctgatagaacactatggcataatttgat 28117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 32516669 - 32516790
Alignment:
Q  105 tcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgat 204  Q
    |||||| | ||||| |||||||||| ||| ||||||||||||| || ||||||||  ||| |||  ||||||||||||| || |||||||| ||||||||    
T  32516669 tcagattacaagaggtagaggaagaccta-aaaaactataagagaaactattagagcagatttagagattaacaagttggattcaaatatggtttatgat 32516767  T
Q  205 tgaactttatgacgtaatttgat 227  Q
     |||  |||||||||||||||||    
T  32516768 agaatattatgacgtaatttgat 32516790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 8082146 - 8082083
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataa 145  Q
    ||||| ||||||||  |||| |||||||||| ||||| |||||||||| |||||||||||||||    
T  8082146 agagtagatcagatgaacgatagtcagatcaaaagaggtagaggaagacctagaaaaactataa 8082083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 29922412 - 29922475
Alignment:
Q  120 tagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttg 183  Q
    |||||||||||||||||||||||||||| || ||||||  ||||| |||  |||||||||||||    
T  29922412 tagaggaagatctagaaaaactataagagaaactattaagaaagatttagagattaacaagttg 29922475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 38684992 - 38685202
Alignment:
Q  17 tggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaag 116  Q
    |||||||||||| | |||| | |||| ||||||||||||||| | |  |||||||  |   | ||||||| ||||| || || ||||||||| | | |||    
T  38684992 tggtagaaaataggcttagatggtttggacatgtagagagaagacccgtagatgccgtcgtaagaagagtagatcaaatggaggagagtcaggttaaaag 38685091  T
Q  117 agatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatga 216  Q
    || |||||||||| |||| |||||||| ||| || | |||||||| || |||  | | ||  ||||| ||||||||||| |||||||| ||||  ||||     
T  38685092 aggtagaggaagacctaggaaaactattagagaaaccattagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacaatatgg 38685191  T
Q  217 cgtaatttgat 227  Q
    ||| |||||||    
T  38685192 cgtcatttgat 38685202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 6889122 - 6889225
Alignment:
Q  121 agaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgta 220  Q
    ||||||||  ||||||||||||||||| || ||||||| ||||| |||  ||||||  |||||   | ||||||| |||||||| |||| ||||| ||||    
T  6889122 agaggaaggcctagaaaaactataagagaaactattaggaaagatttagagattaattagttgggccaaaatatggtttatgatagaacattatggcgta 6889221  T
Q  221 attt 224  Q
    ||||    
T  6889222 attt 6889225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 16347635 - 16347488
Alignment:
Q  17 tggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaag 116  Q
    |||||||||||| | |||| | |||| ||||||||||||||| | |  |||||||  |  || ||||||| ||||| || || ||||||||| | | |||    
T  16347635 tggtagaaaataggcttagatggtttggacatgtagagagaagacccgtagatgcctttgcaagaagagtagatcaaatggaggagagtcaggttaaaag 16347536  T
Q  117 agatagaggaagatctagaaaaactataagaaaagctattagaaaaga 164  Q
    || |||||||||| |||| |||||||| | | || | |||||||||||    
T  16347535 aggtagaggaagacctaggaaaactattaaagaaaccattagaaaaga 16347488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 29938226 - 29938321
Alignment:
Q  103 agtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatg 202  Q
    |||||||||| ||||| |||||||||| |||||||||||    || || ||||||| || || |||||||||||  ||||| ||  ||||||||||||||    
T  29938226 agtcagatcacaagaggtagaggaagacctagaaaaact----gagaaactattaggaatgatttaatgattaatgagttggattgaaatatgatttatg 29938321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 42504336 - 42504294
Alignment:
Q  185 atccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||||||||| |||||||| |||| |||||||||||||||||    
T  42504336 atccaaatatggtttatgatagaacattatgacgtaatttgat 42504294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 1525734 - 1525810
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattag 158  Q
    ||||| |||||||| || |||||||||||||  |||| ||| || ||| |||||||||||| |||| || |||||||    
T  1525734 agagtagatcagatggaggagagtcagatcactagaggtaggggtagacctagaaaaactacaagagaaactattag 1525810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 14667910 - 14668006
Alignment:
Q  131 ctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||||||||||||||| |||||| ||  |||||  ||  ||||||  ||||| |||||| |||| |||||||| |||| |||||  ||||||||||    
T  14667910 ctagaaaaactataagagaagctactaagaaagatctagagattaatgagttggatccaagtatggtttatgatagaacattatggtgtaatttgat 14668006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 15168879 - 15168983
Alignment:
Q  100 gagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgattt 199  Q
    |||||| |||| ||||||| |||||||  | ||||||||||||||||| || || |||| ||| | |||  | |||| |||||| ||||| ||||| |||    
T  15168879 gagagtgagattagaagaggtagaggacaacctagaaaaactataagagaaactgttaggaaaaatttagaggttaataagttggatccagatatggttt 15168978  T
Q  200 atgat 204  Q
    |||||    
T  15168979 atgat 15168983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 20367080 - 20367136
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatag 235  Q
    ||||| ||||||||||| |||||||   ||| ||||||||||||||||| |||||||    
T  20367080 agttggatccaaatatggtttatgacataacattatgacgtaatttgatccatatag 20367136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 26490339 - 26490583
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||||||||||| | |||||| |||| |||||||||| | || | || | |||| | ||  ||||||||| ||||||||||| |||| ||| || |||     
T  26490339 atggtagaaaataggcttaggtggtttggacatgtagataaaagaccgttggatgttgtagtacgaagagtagatcagatagaggagaatcatattagat 26490438  T
Q  116 gagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatg 215  Q
    |||  || ||||||| ||||||||||| |||| || ||||||||||||| |||  || |||  ||||  |||||||| ||||||   || |||  |||||    
T  26490439 gaggcagtggaagatatagaaaaactagaagagaaactattagaaaagatttagagactaatgagtttgatccaaatgtgatttcatatagaatattatg 26490538  T
Q  216 acgtaatttgattcatatagtcggtcatacttagtgagataagac 260  Q
     ||||||||||| |||||||||| ||  ||||||| |||||||||    
T  26490539 gcgtaatttgatccatatagtcgatcccacttagtaagataagac 26490583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 45289285 - 45289138
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| |||||||| || || ||| |||| | ||||||||||||||||||||  |||||||||||| || ||||||| ||||| |||  ||||||  |    
T  45289285 gaagagtagatcagatggaggatagttagattacaagagatagaggaagatctatgaaaactataagagaaactattaggaaagatttagagattaatga 45289186  T
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||| ||||||||||| |||||||| |||| ||||  | |||||||||    
T  45289185 gttggatccaaatatggtttatgatagaacattatagcataatttgat 45289138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 39235162 - 39235310
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||||||||||| | |||||| |||| | ||||||||||||| | |  |||||| | ||  ||||||||| |||||||| || || |||||||||| ||    
T  39235162 atggtagaaaataggcttaggtggtttgggcatgtagagagaagacctgtagatgttgtagtacgaagagtagatcagatggaggaaagtcagatcaaaa 39235261  T
Q  116 gagatagaggaagatctagaaaaactataagaaaagctattagaaaaga 164  Q
    ||| |||||||||| | | |||||||||| || || ||||||| |||||    
T  39235262 gaggtagaggaagacccaaaaaaactataggataaactattaggaaaga 39235310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 48508323 - 48508470
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| |||||||| || ||||||||| ||| ||||| |||||||||| |||| |||||||||||| || | |||||||| || |||  | | ||  |    
T  48508323 gaagagtagatcagatggaggagagtcaggtcaaaagaggtagaggaagacctaggaaaactataagagaaaccattagaaaggatttagaggtcaatga 48508422  T
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    |||| || |||||||| |||||||| ||||  |||| |||||||||||    
T  48508423 gttggattcaaatatggtttatgatagaacactatggcgtaatttgat 48508470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 19676308 - 19676128
Alignment:
Q  46 catgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataa 145  Q
    ||||||||||||| | |  |||||||| ||  || |||||  ||||||||||| ||||||||||||| ||||| || ||||||| ||||||||||| |||    
T  19676308 catgtagagagaagacctgtagatgctgtagtacaaagagaagatcagatagaggagagtcagatcaaaagaggta-aggaagacctagaaaaactgtaa 19676210  T
Q  146 gaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    || || ||||||| ||| | |||  | ||||  ||||| ||||||||||| | |||||| || | ||||| ||| |||||||    
T  19676209 gagaaactattaggaaaaatttagaggttaatgagttggatccaaatatgctgtatgatagagcattatggcgtgatttgat 19676128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 55384119 - 55384054
Alignment:
Q  173 ttaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcg 238  Q
    |||| |||||||||| |||||||||||||||| |||| |||||||||||||||||| || ||||||    
T  55384119 ttaataagttgaatctaaatatgatttatgatagaacgttatgacgtaatttgatttatttagtcg 55384054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 39600873 - 39600728
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| |||||||| || || ||||||||   ||||| |||||||||| ||||||||||||||||| || ||||||  ||||| |||  | ||||  |||    
T  39600873 agagtagatcagatcgaggatagtcagattgcaagaggtagaggaagacctagaaaaactataagagaaactattaagaaagatttagaggttaatgagt 39600774  T
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    || |||||||| || |||| ||| |||| |||||  ||||||||||    
T  39600773 tggatccaaatctggtttacgatagaacattatggtgtaatttgat 39600728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 23534762 - 23534606
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| |||||||| || || ||| ||||||  |||| |||||||||| | | ||||| ||||| | || ||||||| |||||||||  ||||||  |||    
T  23534762 agagtagatcagatggatgatagttagatcactagaggtagaggaagacccaaaaaaattataacagaaactattaggaaagacttagagattaatgagt 23534663  T
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcg 238  Q
    || |    ||||||||||||||| |||| ||||| ||||||||||| ||| ||||||    
T  23534662 tggactgtaatatgatttatgatagaacattatggcgtaatttgatccatgtagtcg 23534606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 54365128 - 54365022
Alignment:
Q  121 agaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgta 220  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||||   ||||||   |||  | | ||||||| |||||||| ||||  |||||||||    
T  54365128 agaggaagacctagaaaaactataagagaaactattaggaaagacttggagattaatgtgttagaccaaaatatggtttatgatagaacactatgacgta 54365029  T
Q  221 atttgat 227  Q
    |||||||    
T  54365028 atttgat 54365022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 49503812 - 49503691
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||||||||||| | |||||| |||| | ||||||||||||| | | ||||||| | ||| || || ||| |||||||| || | ||||| ||| ||||    
T  49503812 atggtagaaaataggcttaggtggtttgggcatgtagagagaagaccaatagatgttgtaatacaaacagtagatcagatggaggggagtctgattagaa 49503713  T
Q  116 gagatagaggaagatctagaaa 137  Q
    ||  |||||||||| |||||||    
T  49503712 gatgtagaggaagacctagaaa 49503691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 38430936 - 38431012
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctatt 156  Q
    ||||||| |||||||| || |||||||| |||| ||||| ||||||||||  ||||||||||| |||| || |||||    
T  38430936 gaagagtagatcagatggaggagagtcaaatcaaaagaggtagaggaagacttagaaaaactacaagagaaactatt 38431012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 19757924 - 19758050
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||||||||||| |||||||| ||||   |||| |||||||| | |  |||||| | ||  | ||||||| |||||||| || |||||| |||||| ||    
T  19757924 atggtagaaaataggtttaggtggtttgagcatgcagagagaagacctgtagatgttgtagtaagaagagtagatcagatggaggagagttagatcaaaa 19758023  T
Q  116 gagatagaggaagatctagaaaaactat 143  Q
     || |||||||||| |||||||||||||    
T  19758024 -aggtagaggaagacctagaaaaactat 19758050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 48734393 - 48734266
Alignment:
Q  16 atggtagaaaatatgtttaggtagtttcgacatgtagagagaataacgatagatgctataacacgaagagtggatcagatagacgagagtcagatcagaa 115  Q
    ||||||||||||| | |||||| |||| | ||||||||||||| |||  |||| ||| ||  ||||||||| |||||||| ||    ||| |||||| ||    
T  48734393 atggtagaaaataggcttaggtggtttgggcatgtagagagaagaactgtagaggctgtagtacgaagagtagatcagatggagattagttagatcaaaa 48734294  T
Q  116 gagatagaggaagatctagaaaaactat 143  Q
    ||| |||||||||  || ||||||||||    
T  48734293 gaggtagaggaaggccttgaaaaactat 48734266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 48953615 - 48953469
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagactta--atgattaac 177  Q
    ||||||| |||||||| || ||||||| | ||| ||||  |||||||||| |||| |||||||||||| ||   |||| |||  |||||  | | | ||     
T  48953615 gaagagtagatcagatggaggagagtcgggtcaaaagaagtagaggaagacctaggaaaactataagagaaatcattaaaaagaacttataaaggtcaat 48953516  T
Q  178 aagttgaatccaaatatgatttatgattgaactttatgacgtaattt 224  Q
     ||||| |||||||||||||||||||| ||||  |||||||||||||    
T  48953515 gagttggatccaaatatgatttatgatagaacactatgacgtaattt 48953469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 50960831 - 50960716
Alignment:
Q  80 gaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaa 179  Q
    ||||||| |||||||| || ||||||| ||||  |||||  ||||||||| ||||||||| | ||||| || ||||||| ||||  |||  ||||||  |    
T  50960831 gaagagtagatcagatggaggagagtcggatcgaaagagggagaggaagacctagaaaaaatttaagagaaactattaggaaaggtttagagattaatga 50960732  T
Q  180 gttgaatccaaatatg 195  Q
    |||| |||||||||||    
T  50960731 gttggatccaaatatg 50960716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 39208801 - 39208843
Alignment:
Q  185 atccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||||||||| |||||||| |||| |||||||||||||||||    
T  39208801 atccaaatatggtttatgatagaacattatgacgtaatttgat 39208843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 48777381 - 48777312
Alignment:
Q  153 tattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaat 222  Q
    ||||||||||||||| | ||||||  ||||||| |  |||||||||||||||| ||| ||||||| ||||    
T  48777381 tattagaaaagacttgaagattaatgagttgaaccacaatatgatttatgattaaacattatgacttaat 48777312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 40106715 - 40106667
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||| ||||||||||| |||||||| |||| ||||||| |||||||||    
T  40106715 agttggatccaaatatggtttatgatagaacattatgacataatttgat 40106667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 40116619 - 40116519
Alignment:
Q  123 aggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaat 222  Q
    ||||||| ||||||||||||||||| || ||||||| | ||| |||  ||||||  ||||| | | ||||||| |||||||| |||| || || ||||||    
T  40116619 aggaagacctagaaaaactataagagaaactattaggatagatttagagattaatgagttggaccgaaatatggtttatgatagaacattgtggcgtaat 40116520  T
Q  223 t 223  Q
    |    
T  40116519 t 40116519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 44571529 - 44571593
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataag 146  Q
    ||||| ||||| || || || |||||||| | ||||| |||| ||||||||||||||||||||||    
T  44571529 agagtagatcaaatggatgatagtcagattacaagaggtagaagaagatctagaaaaactataag 44571593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 43573283 - 43573177
Alignment:
Q  120 tagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgt 219  Q
    |||||||||| |||||||||||||||||||| | | ||| ||||| |||| | ||||  ||||| |||||||||||||||||||| |||| ||||| |||    
T  43573283 tagaggaagacctagaaaaactataagaaaaacaactaggaaagatttaagg-ttaatgagttggatccaaatatgatttatgatcgaacgttatggcgt 43573185  T
Q  220 aatttgat 227  Q
    ||||||||    
T  43573184 aatttgat 43573177  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 271
Target Start/End: Original strand, 13149418 - 13149611
Alignment:
Q  79 cgaagagtggatcagatagacgagagtcagatcagaaga-gatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaac 177  Q
    |||||||| ||| |||| || || ||||||||||||||| | ||||||||||  ||| |||||||||||| || ||||||  ||||| |||  | ||||     
T  13149418 cgaagagtagataagatggaggaaagtcagatcagaagatgttagaggaagacttaggaaaactataagagaaactattatgaaagatttagaggttaat 13149517  T
Q  178 aagttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcggtcatacttagtgagataagaccttgttgttgt 271  Q
     ||| ||||||||||||  || ||||| |||| ||||||| ||||||||| ||||||| || ||  | ||| ||||||||||| | ||||||||    
T  13149518 gagtagaatccaaatatcgttgatgatagaacattatgacataatttgatccatatagccgatctcaattaatgagataagacttggttgttgt 13149611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 12141634 - 12141767
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| |||||||| || || ||||| || | ||||| |||||||||| |||||||| ||||| || || ||||||| |||||||||  ||||||  | |    
T  12141634 agagtagatcagattgaggatagtcaaattacaagaggtagaggaagacctagaaaagctataggagaaactattaggaaagacttagagattaatgact 12141733  T
Q  182 tgaatccaaatatgatttatgattgaactttatg 215  Q
    || ||||||||||| | |||||| |||| |||||    
T  12141734 tggatccaaatatggtatatgatagaacattatg 12141767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 18959001 - 18959146
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| |||||||| || || ||||||||||  ||||  ||||||||| |||||||||||| |||| || |||| || ||||||||   ||||||  |||    
T  18959001 agagtagatcagatggaggatagtcagatcatcagaggcagaggaagacctagaaaaactacaagagaaactataaggaaagacttggagattaatgagt 18959100  T
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    || ||| ||||||| | |||||| |||| ||||| | |||||||||    
T  18959101 tggatcaaaatatggtctatgatagaacattatggcataatttgat 18959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 19235176 - 19235102
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctatt 156  Q
    ||||| |||||||| || | |||||| ||||  ||||||||||||||| ||||||||||||||||| || |||||    
T  19235176 agagtagatcagatggaggggagtcaaatcactagagatagaggaagacctagaaaaactataagagaaactatt 19235102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 45543232 - 45543120
Alignment:
Q  114 aagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaacttta 213  Q
    ||||| |||||||||| || |||||||||||||| || ||||||||||||| |||  |  |||  ||||  ||||||||||| |||||||| |||| |||    
T  45543232 aagaggtagaggaagacctggaaaaactataagagaaactattagaaaagatttagag-gtaatgagttcgatccaaatatggtttatgatagaacatta 45543134  T
Q  214 tgacgtaatttgat 227  Q
    || |||| ||||||    
T  45543133 tggcgtactttgat 45543120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 11744631 - 11744759
Alignment:
Q  100 gagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgattt 199  Q
    ||||||| ||||| ||| | || |||||||  |||||||||||||| |||| ||||||  ||| | |||| | ||||  | |||||| ||| ||| ||||    
T  11744631 gagagtcggatcaaaagcggtataggaagacatagaaaaactataaaaaaaactattatgaaaaatttaaaggttaatgaattgaattcaattataattt 11744730  T
Q  200 atgattgaactttatgacgtaatttgatt 228  Q
    ||||| |||| |||||| |||||||||||    
T  11744731 atgatcgaacattatgatgtaatttgatt 11744759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 32443751 - 32443812
Alignment:
Q  78 acgaagagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaa 139  Q
    ||||||||||||| |||| || || |||||||| | ||||| ||| ||||||||||||||||    
T  32443751 acgaagagtggataagatggaggatagtcagattaaaagaggtagtggaagatctagaaaaa 32443812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 38435042 - 38435187
Alignment:
Q  82 agagtggatcagatagacgagagtcagatcagaagagatagaggaagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagt 181  Q
    ||||| ||||| || || || ||||||||||  ||||  ||||| ||| |||||||||||| |||| || ||||||  |||||  ||  ||||||   ||    
T  38435042 agagtagatcatatggaggatagtcagatcactagaggcagaggtagacctagaaaaactacaagagaaactattaagaaagatctagagattaatgtgt 38435141  T
Q  182 tgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    || ||| |||| || ||||||||||||| ||||| |||||||||||    
T  38435142 tggatcgaaatttggtttatgattgaacattatggcgtaatttgat 38435187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 9496053 - 9496101
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||| ||||||||||| |||||||| |||| ||||| |||||||||||    
T  9496053 agttggatccaaatatggtttatgatagaacattatggcgtaatttgat 9496101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 21834688 - 21834800
Alignment:
Q  126 aagatctagaaaaactataagaaaagctattagaaaagacttaatgattaacaagttgaatccaaatatgatttatgattgaactttatgacgtaatttg 225  Q
    |||||||||||||||||||||| || ||||||| ||| | |||  ||||||  ||||| ||| |||| || |||||||| ||||  |||||| || ||||    
T  21834688 aagatctagaaaaactataagataaactattaggaaatatttatagattaatgagttggatctaaatttggtttatgatagaacaatatgacatattttg 21834787  T
Q  226 attcatatagtcg 238  Q
     | ||| ||||||    
T  21834788 gtccatgtagtcg 21834800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 42149745 - 42149701
Alignment:
Q  189 aaatatgatttatgattgaactttatgacgtaatttgattcatat 233  Q
    ||||||| |||||||| |||| ||||| |||||||||||||||||    
T  42149745 aaatatggtttatgatagaacattatggcgtaatttgattcatat 42149701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 86703 - 86644
Alignment:
Q  180 gttgaatccaaatatgatttatgattgaactttatgacgtaatttgattcatatagtcgg 239  Q
    |||| ||||||||||||| |||||| ||||  |||||||||||||||| ||| |||||||    
T  86703 gttggatccaaatatgatgtatgatagaacactatgacgtaatttgatccatgtagtcgg 86644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 82905 - 82953
Alignment:
Q  179 agttgaatccaaatatgatttatgattgaactttatgacgtaatttgat 227  Q
    ||||| |||||||||||||||||||| ||||  |||||||| |||||||    
T  82905 agttggatccaaatatgatttatgatagaacactatgacgtcatttgat 82953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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