View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_35 (Length: 381)

Name: NF16688_low_35
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_35
NF16688_low_35
[»] chr2 (2 HSPs)
chr2 (13-255)||(37842120-37842361)
chr2 (274-322)||(37842359-37842407)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 37842120 - 37842361
Alignment:
Q  13 cacaaattgcaactaattagtggggaaaaacacctaaaacagaaaattaaggtcctcgtcttggataacaatacgttttggagggctaggtctccgattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37842120 cacaaattgcaactaattagtggggaaaaacacctaaaacataaaattaaggtcctcgtcttggataacaatacgttttggagggctaggtctccgattt 37842219  T
Q  113 tattagtgtaatagtcttctatcatgagatgtactttgaacatatatcatatattagtcctcacaattttattttattttcatgattagtgtacagaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37842220 tattagtgtaatagtcttctatcatgagatgtactttgaacatatatcatatattagtcctcacaattttatttt-ttttcatgattagtgtacagaata 37842318  T
Q  213 ctatttccacttctctaaaaagataggtgtttccctcaactct 255  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  37842319 ctattttcacttctctaaaaagataggtgtttctctcaactct 37842361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 37842359 - 37842407
Alignment:
Q  274 tctctcaatggcatttgcatcctcttctctccaattcacaccattaaca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37842359 tctctcaatggcatttgcatcctcttctctccaattcacaccattaaca 37842407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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