View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_38 (Length: 362)
Name: NF16688_low_38
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 14846929 - 14847253
Alignment:
| Q |
17 |
caaaggacggtacttgtgatgaaataaagtacatgatattgagtttcgcttcatagggaagtttgattttgatatcttactaactcatgtttccactgca |
116 |
Q |
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| T |
14846929 |
caaaggacggtacttgtgatgaaatagagtacatgatattgagtttcgcttcatagggaagtttgattttgatatcttactaactcatgtttccactgca |
14847028 |
T |
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| Q |
117 |
aagctcatttacaagagattcaatgctcctttataacacctagctttaggtttcttttgattaggaaataatgcatgtaatgaaaatggattcgttcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14847029 |
aagctcatttacaagagattcaatgctcctttataacatctagctttaggtttcttttgattaggaaataatgcatgtaatgaaaatggattcgttcaat |
14847128 |
T |
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| Q |
217 |
gtaataatacaaaacacacgtggtgaaggattggatatatacaatgaaaagnnnnnnntgaatacaaaatcatttttatttaaattaaattaacaatctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14847129 |
gtaataatacaaaacacacgtggtgaaggattggatatatacaatgaaaagaaaaaaatgaatacaaaatcatttttatttaaattaaattaacaatctt |
14847228 |
T |
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| Q |
317 |
tgatctattagcttagtaagggatg |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
14847229 |
tgatctattagcttagtaagggatg |
14847253 |
T |
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