View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_39 (Length: 361)

Name: NF16688_low_39
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_39
NF16688_low_39
[»] chr7 (13 HSPs)
chr7 (19-345)||(6094302-6094628)
chr7 (251-345)||(6101050-6101144)
chr7 (34-315)||(6247312-6247608)
chr7 (220-345)||(6089136-6089261)
chr7 (34-315)||(6180491-6180787)
chr7 (238-315)||(6234711-6234788)
chr7 (238-315)||(6208293-6208370)
chr7 (238-315)||(6237592-6237669)
chr7 (159-315)||(6106243-6106402)
chr7 (239-315)||(6213145-6213221)
chr7 (159-200)||(6234590-6234631)
chr7 (159-200)||(6237465-6237506)
chr7 (34-200)||(6208038-6208213)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 6094302 - 6094628
Alignment:
Q  19 tttattccattcatttttccactgatgaatatcatcatgctctttcatggttcttgacattacattgattccaagcggtagaccctcgcatctttgtaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094302 tttattccattcatttttccactgatgaatatcatcatgctctttcatggttcttgacattacattgattccaagcggtagaccctcgcatctttgtaca 6094401  T
Q  119 atacttctcgcaatcttgtctacttcatatggaagtggtgcatcatgtccgagttttagcataaacaactcccaatcttcatggtagagaggtagcattt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094402 atacttctcgcaatcttgtctacttcatatggaagtggtgcatcatgtccgagttttagcataaacaactcccaatcttcatggtagagaggtagcattt 6094501  T
Q  219 gtatcatatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||  ||||||| ||| |  |||||||  |    
T  6094502 gtatcatatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgttagaatcactttaattacattcacatttagaggaattcccac 6094601  T
Q  319 cttttgaaaatcgatgtacctccaaac 345  Q
    |||||| ||||| |||||  |||||||    
T  6094602 cttttgcaaatcaatgtatttccaaac 6094628  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 6101050 - 6101144
Alignment:
Q  251 tgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctccaaac 345  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||  | |||||||||||||||| || |||||||||||||||||||||||    
T  6101050 tgacacacgtgtttcaaacgagttgtcagaatgagtttaatgccattcgttcttggctgaattccagctttctgaaaatcgatgtacctccaaac 6101144  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 6247312 - 6247608
Alignment:
Q  34 tttccactgatgaatatcatcatgctctttcatggttcttgacattacattgattccaagcggtagaccctcgcatctttgtacaatacttctcgcaatc 133  Q
    |||||| |||||||  ||||||  | ||||||||||||| | ||||||||||||| ||||||||| |||||   |||| | |||||||| ||||||||||    
T  6247312 tttccattgatgaaagtcatcaacccctttcatggttctagccattacattgattgcaagcggtaaacccttaaatctctctacaatacatctcgcaatc 6247411  T
Q  134 ttgtctacttcatatggaa---------gtggtgcatcatgtccgagttttagcataaacaactcccaatcttcatggtag------agaggtagcattt 218  Q
    || |||| ||||| |||||         ||| | ||||||||||||||||||||||||||||||||||||||| || || |      |||||    ||||    
T  6247412 ttttctatttcatttggaaatatcttaggtgttccatcatgtccgagttttagcataaacaactcccaatctttattgttgccattaagaggatctattt 6247511  T
Q  219 gtatcatatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattcc 315  Q
    |||  |||  |  ||||   |||||||||| |||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| ||||||||    
T  6247512 gtagtatagcacatggctggcaatccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcc 6247608  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 6089136 - 6089261
Alignment:
Q  220 tatcatatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagcc 319  Q
    ||||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||| ||| | |||||| |||||||| ||||  ||||||||  ||    
T  6089136 tatcatatgatttggcatacaatccatctgttgacacacaagtttcaaacgagttgtcagaattactttaataccattcacctttgtatgaattcccacc 6089235  T
Q  320 ttttgaaaatcgatgtacctccaaac 345  Q
    ||||  ||||| |||||  |||||||    
T  6089236 ttttccaaatcaatgtatttccaaac 6089261  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 6180491 - 6180787
Alignment:
Q  34 tttccactgatgaatatcatcatgctctttcatggttcttgacattacattgattccaagcggtagaccctcgcatctttgtacaatacttctcgcaatc 133  Q
    |||||| |||||||  ||||||  | ||||||||||||| | ||| ||||||||| ||||||||| |||||   |||| | || ||||| ||||||||||    
T  6180491 tttccattgatgaaagtcatcaacccctttcatggttctagccatcacattgattgcaagcggtaaacccttaaatctctctataatacatctcgcaatc 6180590  T
Q  134 ttgtctacttcatatggaa---------gtggtgcatcatgtccgagttttagcataaacaactcccaatcttcatggtag------agaggtagcattt 218  Q
    || |||| ||||| |||||         ||| | ||||||||||||||||||||||||||||||||||||||| || || |      |||||    ||||    
T  6180591 ttttctatttcatttggaattatcttaggtgttccatcatgtccgagttttagcataaacaactcccaatctttattgttgccattaagaggatctattt 6180690  T
Q  219 gtatcatatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattcc 315  Q
    |||  |||  |  ||||   |||||||||| |||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| ||||||||    
T  6180691 gtagtatagcacatggctggcaatccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcc 6180787  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 6234711 - 6234788
Alignment:
Q  238 acaatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattcc 315  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||    
T  6234711 acaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttggatgaattcc 6234788  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 6208293 - 6208370
Alignment:
Q  238 acaatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattcc 315  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||    
T  6208293 acaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcc 6208370  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 6237592 - 6237669
Alignment:
Q  238 acaatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattcc 315  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||    
T  6237592 acaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcc 6237669  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 315
Target Start/End: Original strand, 6106243 - 6106402
Alignment:
Q  159 catcatgtccgagttttagcataaacaactcccaatcttca--tg-gtagagaggtagcatttgtatcatatgatctggcatacaatccatctcgtgaca 255  Q
    ||||||||||||||||||||||||||||||||||  |||||  || |  |||||| |  |||||||| |||  || |||    |||| ||||| || |||    
T  6106243 catcatgtccgagttttagcataaacaactcccacccttcacatgcgctgagaggaaagatttgtattatagcatatgggtggcaattcatctggtcaca 6106342  T
Q  256 cacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattcc 315  Q
     |||||||||||||| ||||| | ||| | ||||||||||||||||||||| ||||||||    
T  6106343 tacatgtttcaaacgtgttgttagaatcactttaatgccattcacttttggatgaattcc 6106402  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 6213145 - 6213221
Alignment:
Q  239 caatccatctcgtgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattcc 315  Q
    |||||||||| || ||| ||||||| |||||||||||||||||| | |||||||||||| |||| ||| ||||||||    
T  6213145 caatccatctggtaacatacatgttccaaacgagttgtcaaaatcactttaatgccatttacttctggatgaattcc 6213221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 6234590 - 6234631
Alignment:
Q  159 catcatgtccgagttttagcataaacaactcccaatcttcat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  6234590 catcatgtccgagttttagcataaacaactcccaaccttcat 6234631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 6237465 - 6237506
Alignment:
Q  159 catcatgtccgagttttagcataaacaactcccaatcttcat 200  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  6237465 catcatgtccaagttttagcataaacaactcccaatcttcat 6237506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 6208038 - 6208213
Alignment:
Q  34 tttccactgatgaatatcatcatgctctttcatggttcttgacattacattgattccaagcggtagaccctcgcatctttgtacaatacttctcgcaatc 133  Q
    |||||| |||||||| ||||||| | | | ||||||||| | ||| |  ||||||||||| |||| |||||   |||| | |||||| | ||||||||||    
T  6208038 tttccattgatgaatgtcatcattcccatccatggttctagccatcaagttgattccaagtggtaaacccttaaatctctctacaatgcatctcgcaatc 6208137  T
Q  134 ttgtctacttcatatggaagtg------gtg---catcatgtccgagttttagcataaacaactcccaatcttcat 200  Q
    |  |||| ||||| ||||||||      |||   |||||||||| |||||||||||||||||||||||| ||||||    
T  6208138 tcttctatttcatgtggaagtgtcctaggtgtttcatcatgtccaagttttagcataaacaactcccaaccttcat 6208213  T

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