View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_4 (Length: 699)
Name: NF16688_low_4
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_4 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 413 - 699
Target Start/End: Complemental strand, 23747893 - 23747608
Alignment:
| Q |
413 |
ggaaaatcgttagcagcaaggatgcaaccctgaacatccttcttaataactccttcccgggggcctgtgtgaatatttagttgatgcatccctacattga |
512 |
Q |
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| T |
23747893 |
ggaaaattgtttgcagcaaggatgcaaccctgaacatccttcttaata-ctagttcccgggggcctgtgtgaatatttagttgatgcatccctacattga |
23747795 |
T |
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| Q |
513 |
ttgttaaaaatgtagtttttgcactgagttgaaattttcagacttttaactaattttgaaataaaagtttttgaacatggaccactcactccaatctata |
612 |
Q |
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| T |
23747794 |
ttgttaaaaatgtagtttttgcacttagttgaaattttcagacttttaactaattttgaaataaaagttttcaaacatggaccactcactccaatctata |
23747695 |
T |
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| Q |
613 |
ttcactttcaactaaaatcaattttgaaaatcaagttcatctaaaatcaagtttgctaacgctgagtcaaacacataatggtttagt |
699 |
Q |
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| T |
23747694 |
ttcactttcaactaaaatcaattttgaaaataaagttcatctaaaatcaagtttgctaacgctgagccaaacacataatggtttagt |
23747608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 23748274 - 23747934
Alignment:
| Q |
13 |
aatatcggatacaggaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaat |
112 |
Q |
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| T |
23748274 |
aatatcggatacaggaattgaagcaataactagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaa--ttcttaat |
23748177 |
T |
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| Q |
113 |
gtgccatgtttgatttagcatttgaaaatcttactttggatttacaagtcaatccttagtaacaatactgaaatatgactcttatttcagggtaactgat |
212 |
Q |
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| T |
23748176 |
gacccgtgtttgatttagcatttgaaaatctcactttggatttaaaagtcaatccttagcaacaatactgaa-tatgactcttatttcagggtaactgat |
23748078 |
T |
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| Q |
213 |
actggactactacatacagtgaggaactgtaaacacattgttgatttgaatataagtggttgtaaggtacacgatgccctgtagttgtgattttgtacac |
312 |
Q |
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| T |
23748077 |
actggactactacatacagcgaggaactgcaaacacattgttgatttgaatataagtggttgtaaggtacacgatgcc--gtagttgtgattttgtacgc |
23747980 |
T |
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| Q |
313 |
ttacgttattattgttattattatacgtatcgtacattgtgtgtatatttag |
364 |
Q |
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| T |
23747979 |
ttaggtta------ttatcattacacatatcatacattgtgtgtatatttag |
23747934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 23687333 - 23687119
Alignment:
| Q |
27 |
gaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaatgtgccatgtttgat |
126 |
Q |
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| T |
23687333 |
gaattgaagcaataaccagttgttgtcctcagctagaaacctgttccatctactggaatgtgaggtgcattcaattttttctaaatgtgcaatgtttgat |
23687234 |
T |
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| Q |
127 |
ttagcatttgaaaatcttactttggatttacaagtcaatccttagtaacaatactgaaatatgactcttatttcagggtaactgatactggactactaca |
226 |
Q |
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| T |
23687233 |
tttgcagttgaaaacctcactttggatttaaaagttaatccttagcaacaatactgaaatatgagtcctattacaggataactgataatcgactacttca |
23687134 |
T |
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| Q |
227 |
tacagtgaggaactg |
241 |
Q |
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| T |
23687133 |
tacagtgaggaactg |
23687119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 672
Target Start/End: Complemental strand, 23679444 - 23679343
Alignment:
| Q |
571 |
aaataaaagtttttgaacatggaccactcactcca-atctatattcactttcaactaaaatcaattttgaaaatcaagttcatctaaaatcaagtttgct |
669 |
Q |
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| T |
23679444 |
aaataaaagttttcaaacatgaatcactcactccacatc-atactcagtttcaactgaaatcaatttcgaaaatcaaattcatttaaaataaagtttgct |
23679346 |
T |
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| Q |
670 |
aac |
672 |
Q |
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| T |
23679345 |
aac |
23679343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 23743232 - 23743287
Alignment:
| Q |
29 |
attgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaa |
84 |
Q |
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| T |
23743232 |
attgaagcaataaccagttgttgttctcagctataaaccttttccatctactggaa |
23743287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 23721392 - 23721338
Alignment:
| Q |
27 |
gaattgaagcaataaccagttgttgtcctcagcta-aaaacattttccgtctact |
80 |
Q |
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| T |
23721392 |
gaattgaagcaataaccaattgttgtcctcagctagaaaactttttccatctact |
23721338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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