View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_40 (Length: 360)
Name: NF16688_low_40
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 10999783 - 11000114
Alignment:
| Q |
11 |
ttatacttccatacaacaacgtgcatggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaaga |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10999783 |
ttatacttccatacaacaacgtgcatggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaaga |
10999882 |
T |
|
| Q |
111 |
cagtcccgaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaa |
210 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10999883 |
cagtcccgaaaactgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaa |
10999982 |
T |
|
| Q |
211 |
tcgattaattacaacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtataatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10999983 |
tcgattaattacaacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtataatt |
11000082 |
T |
|
| Q |
311 |
tcacttcaacgaccatcaatccaagagtcttg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
11000083 |
tcacttcaacgaccatcaatccaagagtcttg |
11000114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 11002760 - 11003083
Alignment:
| Q |
11 |
ttatacttccatacaacaacgtgcatggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaaga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
11002760 |
ttatacttccatacaacaacgtgcatggagatgaacaacaagattcatgctctacaaggtgcggtgaccataacataagccaccctttccgattgaaaga |
11002859 |
T |
|
| Q |
111 |
cagtcccgaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaa |
210 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11002860 |
cagtcccgaaaactgtggtgacaaaaggtacatcttatcatgtgaggacaacaaccaattgattttgtactatggttcatttggaaaatactatgtacaa |
11002959 |
T |
|
| Q |
211 |
tcgattaattacaacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtataatt |
310 |
Q |
| |
|
|| ||||||||||| ||||| || ||||| ||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||||| |||| || |
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| T |
11002960 |
tcaattaattacaataacttcactatacgtctattggatttcaatagtcatggttactctaattattccctcccacctcatccactaggcttctatagtt |
11003059 |
T |
|
| Q |
311 |
tcacttcaacgaccatcaatccaa |
334 |
Q |
| |
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|| ||||| |||||||||||||| |
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| T |
11003060 |
tcgattcaaggaccatcaatccaa |
11003083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 10988608 - 10988373
Alignment:
| Q |
26 |
acaacgtgcatggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaagtg |
125 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||| || | |||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||| || |
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| T |
10988608 |
acaaagtgtatggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatg |
10988509 |
T |
|
| Q |
126 |
tggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcgattaattacaac |
225 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10988508 |
tggtgacaataggtacaacctatcatgtgaggacaacaatcaattgattttgtaccatggttcatttggaaaatactatgtacaatcaattaattacaac |
10988409 |
T |
|
| Q |
226 |
aactttaccatacgattattggatttcaataatctt |
261 |
Q |
| |
|
||||||||||| | | ||| | ||||||||| |||| |
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|
| T |
10988408 |
aactttaccatccaactatcgtatttcaatattctt |
10988373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 35 - 261
Target Start/End: Complemental strand, 11019767 - 11019541
Alignment:
| Q |
35 |
atggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaagtgtggtgacaa |
134 |
Q |
| |
|
|||| |||||||||||||||||||| || | |||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
11019767 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaa |
11019668 |
T |
|
| Q |
135 |
taggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcgattaattacaacaactttacc |
234 |
Q |
| |
|
|||||||| | ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11019667 |
taggtacaacctatcatgtgaggacaacaatcaattgattttgtaccatggttcatttggaaaatactatgtacaatcaattaattacaacaactttacc |
11019568 |
T |
|
| Q |
235 |
atacgattattggatttcaataatctt |
261 |
Q |
| |
|
|| | | ||| | ||||||||| |||| |
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|
| T |
11019567 |
atccaactatcgtatttcaatattctt |
11019541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 11009727 - 11009505
Alignment:
| Q |
42 |
tgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaagtgtggtgacaataggtac |
141 |
Q |
| |
|
|||||| ||||||||||| || | |||||| ||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
11009727 |
tgaacatcaagagtcatgttcaagaaggtgcggtgttcatagcatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaaggtac |
11009628 |
T |
|
| Q |
142 |
atcttatcatgtgaggacaacgaccaattgattttgtactatg--gttca-------tttggaaaatactatgtacaatcgattaattacaacaacttta |
232 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
11009627 |
atcctatcatgtgaggacaataaccaattgattttgtactatgaatttgaagaataccatggaaaatactatgtacaatcaattaattacaacaacttca |
11009528 |
T |
|
| Q |
233 |
ccatacgattattggatttcaat |
255 |
Q |
| |
|
|||||||| |||||||||||||| |
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|
| T |
11009527 |
ccatacgactattggatttcaat |
11009505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 66 - 255
Target Start/End: Complemental strand, 10905682 - 10905496
Alignment:
| Q |
66 |
aaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaagtgtggtgacaataggtacatcttatcatgtgaggacaacgac |
165 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||| ||||| ||||||||| || | ||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
10905682 |
aaggtgcggtgtccatagcatcagccaccctttccggttgaatgacagtcccaaacactgtggtgacaaaaggtacatcttatcatgtgaggaca---gc |
10905586 |
T |
|
| Q |
166 |
caattgattttgtactatggttcatttggaaaatactatgtacaatcgattaattacaacaactttaccatacgattattggatttcaat |
255 |
Q |
| |
|
||||| |||||| ||||||| |||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||||||||||||| |
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|
| T |
10905585 |
caattaattttgaactatggatcatttggaaaatattatgtacaatcaattaattacaacaatttcaccatacggctattggatttcaat |
10905496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 11035148 - 11034918
Alignment:
| Q |
25 |
aacaacgtgcatggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaagt |
124 |
Q |
| |
|
||||| ||| |||| |||||||| ||||| ||||| ||| | |||| ||||| |||||||| || |||||||| |||||||||||||| || | | |
|
|
| T |
11035148 |
aacaaagtgtatggtgatgaacaccaagactcatgttctcgatggtgcggtgttcataacatcaggtctcctttccgcttgaaagacagtcctaaagaat |
11035049 |
T |
|
| Q |
125 |
gtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatactatgtacaatcgattaattacaa |
224 |
Q |
| |
|
|||| ||| | ||||||| | ||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11035048 |
gtggcgacgaaaggtacaacctatcatgtgaggacaacaatcaattgattttgtaccatgattcatttggaaaatactatgtacaatcaattaattacaa |
11034949 |
T |
|
| Q |
225 |
caactttaccatacgattattggatttcaat |
255 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| |
|
|
| T |
11034948 |
caacttcaccatacgactattggatttcaat |
11034918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 10975789 - 10975550
Alignment:
| Q |
23 |
acaacaacgtgcatggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaa |
122 |
Q |
| |
|
||||||| ||| |||| |||||||| || |||||||| ||| ||| || |||||||||||||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
10975789 |
acaacaaagtgtatggtgatgaacaccatgagtcatgttctggaagttgcggtgtccataacatcagccaccctttccggctgaaagacagtccc--aaa |
10975692 |
T |
|
| Q |
123 |
gtgtggtgacaataggtacatcttatcatgtgaggacaacgaccaattgattttgtacta------tggttcat---ttggaaaatactatgtacaatcg |
213 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||| ||| || |||||||| ||||||||||| |
|
|
| T |
10975691 |
cactggtgacaagaggtatatcttatcatgtgaggacaacaaccaattgatcttgtactataaagttgggaaatacaccggaaaatattatgtacaatca |
10975592 |
T |
|
| Q |
214 |
attaattacaacaactttaccatacgattattggatttcaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10975591 |
attaattacaacaactttaccatacggctattggatttcaat |
10975550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 316
Target Start/End: Complemental strand, 10922286 - 10921999
Alignment:
| Q |
35 |
atggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaagtgtggtgacaa |
134 |
Q |
| |
|
|||| |||||||| ||||||||||| ||| | |||| ||||| |||||||| || |||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
10922286 |
atggtgatgaacaccaagagtcatgttctcgatggtgcggtgttcataacatcaggtctcctttccgcttgaaagacagtcctaaaaagtgtggtgacaa |
10922187 |
T |
|
| Q |
135 |
taggtacatcttatcatgtgaggacaacgaccaattgattttgtactatggttcatttggaaaatac------------tatgtacaatcgattaattac |
222 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| || ||||||||||| ||||||||| |
|
|
| T |
10922186 |
aagatacatcttatcatgtgaggacaacaaccagttgattttgtactatg---aatttggaaaaaaccatggtaaattttatgtacaatcaattaattac |
10922090 |
T |
|
| Q |
223 |
aacaactttaccatacgattattggatttcaataatcttggtcactctaattattccctccaacctcatccactaggcttgtataatttcactt |
316 |
Q |
| |
|
||||||| || |||||| |||||||| || ||| ||||| ||||||||| | |||||| || ||| |||||||| | ||||||||||||| |
|
|
| T |
10922089 |
aacaactacactatacgactattggatgtc---aattttggttactctaattttaccctccctccccattcactaggcctctataatttcactt |
10921999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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