View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_41 (Length: 357)

Name: NF16688_low_41
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_41
NF16688_low_41
[»] chr1 (18 HSPs)
chr1 (17-346)||(1842532-1842861)
chr1 (17-280)||(1868207-1868470)
chr1 (265-346)||(1868117-1868198)
chr1 (17-98)||(9118377-9118458)
chr1 (17-89)||(9218903-9218975)
chr1 (18-89)||(9170821-9170892)
chr1 (17-86)||(9161994-9162063)
chr1 (18-102)||(1816170-1816254)
chr1 (30-89)||(9200400-9200459)
chr1 (18-111)||(1856781-1856874)
chr1 (17-89)||(9229788-9229860)
chr1 (17-83)||(9156082-9156148)
chr1 (156-250)||(9162133-9162227)
chr1 (153-218)||(9219039-9219104)
chr1 (156-218)||(9156221-9156283)
chr1 (156-218)||(9170959-9171021)
chr1 (156-218)||(9178941-9179003)
chr1 (149-203)||(9229920-9229974)
[»] chr7 (1 HSPs)
chr7 (28-89)||(37567745-37567806)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 1842861 - 1842532
Alignment:
Q  17 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattgattgatttggcttctatctattannnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||        
T  1842861 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaataattacctcattaatgaattgattgatttggcttctatctattatttt 1842762  T
Q  117 nnnnnnnnngatagcaacgattcttttatcatctagaattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttg 216  Q
             ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||    
T  1842761 tgattttttgatagcaacgattcttttatcatctagaaatcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtctttg 1842662  T
Q  217 gttgccttgtttagctgatcttgtgtgaatattttagcactttgagttgaggagtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattct 316  Q
    || ||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  1842661 gtggccttgtttagctgatcttgtgtgaatattttagtgctttcagttgaggagtcttctcttgttgagagtttttgttttaaaatcagaccaccattct 1842562  T
Q  317 gttcgaagaatttctctttcattttgatga 346  Q
    | || |||||||||||||||||||||||||    
T  1842561 gctcaaagaatttctctttcattttgatga 1842532  T

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Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 1868470 - 1868207
Alignment:
Q  17 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattgattgatttggcttctatctattannnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||        
T  1868470 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttt 1868371  T
Q  117 nnnnnnnnngatagcaacgattcttttatcatctagaattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttg 216  Q
             ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  1868370 tgattttttgatagcaacgattcttttatcatctagaagtcctttgaaaacggtaccaaaaccacctttgccaatgattaaattctcgtcgaagtttttg 1868271  T
Q  217 gttgccttgtttagctgatcttgtgtgaatattttagcactttgagttgaggagtcttctcttg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1868270 gttgccttgtttagctgatcttgtgtgaatattttagcactttgagttgaggagtcttgtcttg 1868207  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 1868198 - 1868117
Alignment:
Q  265 gaggagtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatga 346  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868198 gaggagtcttctcttgttgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatga 1868117  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 9118458 - 9118377
Alignment:
Q  17 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattgattgatttg 98  Q
    |||||||||| || ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| | ||||||    
T  9118458 aacaacaccctaaaagtttgacaacattcctatgatttatttgggacagaataactacctcattaatgaattgctcgatttg 9118377  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 9218903 - 9218975
Alignment:
Q  17 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattg 89  Q
    |||||||||| || ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||    
T  9218903 aacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaactacctcattaatgaattg 9218975  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 9170821 - 9170892
Alignment:
Q  18 acaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattg 89  Q
    ||||||||| | |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  9170821 acaacaccctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattg 9170892  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 9161994 - 9162063
Alignment:
Q  17 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaa 86  Q
    ||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  9161994 aacaacatcccaagagtttgacaacatttctatgatttatttgggacagaacaactacctcgttaatgaa 9162063  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 1816170 - 1816254
Alignment:
Q  18 acaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattgattgatttggctt 102  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||| |||| | ||||| ||||||||||| |  |||||||||    
T  1816170 acaacaccccaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaatgaattgttcaatttggctt 1816254  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 9200400 - 9200459
Alignment:
Q  30 gagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattg 89  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  9200400 gagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattg 9200459  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 1856874 - 1856781
Alignment:
Q  18 acaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattgattgatttggcttctatctatt 111  Q
    ||||||||| ||||||||||| ||||| || |||||||||||||||| |||| | ||||||||||||||||| |  ||||||||| | ||||||    
T  1856874 acaacaccctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctatt 1856781  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 9229788 - 9229860
Alignment:
Q  17 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattg 89  Q
    ||||||| |||||||||||||||||||| |||||||||||||| || | |||||| |||||||| ||||||||    
T  9229788 aacaacatcccaagagtttgacaacatttctatgatttatttgggacaaaacaaccacctcatttatgaattg 9229860  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 9156082 - 9156148
Alignment:
Q  17 aacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaat 83  Q
    ||||||| |||||||||||||||||||| || ||||||||||| || || |||||||||||||||||    
T  9156082 aacaacatcccaagagtttgacaacatttctgtgatttatttgggataggacaactacctcattaat 9156148  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 9162133 - 9162227
Alignment:
Q  156 tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattt 250  Q
    |||||||||||| ||||||||||| ||| |||| |||||||| || || ||| |||||||||| || || ||||| |  |||| |||||||||||    
T  9162133 tcctttgaaaactgtaccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatattt 9162227  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 9219039 - 9219104
Alignment:
Q  153 aattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt 218  Q
    ||||||||||||||| ||||||||||| ||| | || |||||||| || |||||| ||||||||||    
T  9219039 aattcctttgaaaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtagtttttggt 9219104  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 9156221 - 9156283
Alignment:
Q  156 tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt 218  Q
    |||||||||||| ||||||||||| ||| |||||||||||||  | || ||| ||||||||||    
T  9156221 tcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggt 9156283  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 9170959 - 9171021
Alignment:
Q  156 tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt 218  Q
    ||||||| |||| ||||||||||| ||| ||||||||||||| || || ||| ||||||||||    
T  9170959 tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggt 9171021  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 9178941 - 9179003
Alignment:
Q  156 tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt 218  Q
    ||||||| |||| ||||||||||| ||| ||||||||||||| || || ||| ||||||||||    
T  9178941 tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggt 9179003  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 9229920 - 9229974
Alignment:
Q  149 ctagaattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctc 203  Q
    |||||||||||||| |||| ||||| ||||| ||| ||||||| |||||||||||    
T  9229920 ctagaattcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctc 9229974  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 37567806 - 37567745
Alignment:
Q  28 aagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattg 89  Q
    ||||||||||| ||||||||||||||||||||||||| ||   | |||||||||||||||||    
T  37567806 aagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattg 37567745  T

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