View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_43 (Length: 334)
Name: NF16688_low_43
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_43 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36387439 - 36387748
Alignment:
| Q |
1 |
cgagatatggcgattttgaatgtttcttttttggaagatgatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36387439 |
cgagatatggcgattttgaatgtttcttttttggaagatgatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtag |
36387538 |
T |
|
| Q |
101 |
tgattcagcaatctggtttccttcaaacattcaggtgggacagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36387539 |
tgattcagcaatctggtttccttcaaacattcaggtgggacagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaacta |
36387638 |
T |
|
| Q |
201 |
tggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36387639 |
tggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattgg |
36387738 |
T |
|
| Q |
301 |
tatcagaata |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
36387739 |
tatcagaata |
36387748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 36425671 - 36425934
Alignment:
| Q |
40 |
gatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtggg |
139 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||| |
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|
| T |
36425671 |
gatgacaactatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtggg |
36425770 |
T |
|
| Q |
140 |
acagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaa |
239 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||||||||| | ||| |||||| |||||| |||||||||||||||||| |||||||||||||||| || |
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|
| T |
36425771 |
acagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaatagtaattgtgaccctttgaa |
36425870 |
T |
|
| Q |
240 |
ctttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtat |
303 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||| |
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|
| T |
36425871 |
ctttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtat |
36425934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 36373480 - 36373782
Alignment:
| Q |
1 |
cgagatatggcgattttgaatgtttcttttttggaagatgatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||| ||| |
|
|
| T |
36373480 |
cgagatatggcgattttgaatgtttcttttgtggaagatgatgataactatgtagcaatctcatataacatgtttgataagtctgtcatagctaggatag |
36373579 |
T |
|
| Q |
101 |
tgattcagcaatctggtttccttcaaacattcaggtgggacagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaacta |
200 |
Q |
| |
|
| ||||||||||||||||| |||||| ||||| ||| ||| ||||| | ||||||| | ||| ||||||||||||| | || |||||| |||||| |
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|
| T |
36373580 |
ttgttcagcaatctggtttctttcaaatattcacttggaacaatcaaaaaagtcaatggaacaggttctggtctgaaccaacaaaccaatgtgataacta |
36373679 |
T |
|
| Q |
201 |
tggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattgg |
300 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||| |||||||| |||||||||||| ||||| ||| |||| |||||| |||||||||||||||||| |
|
|
| T |
36373680 |
tggaacctgtggatcaaacagtaactgtgaccctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattgg |
36373779 |
T |
|
| Q |
301 |
tat |
303 |
Q |
| |
|
||| |
|
|
| T |
36373780 |
tat |
36373782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 36411505 - 36411768
Alignment:
| Q |
40 |
gatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtggg |
139 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||| |||||||||||| || ||| ||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36411505 |
gatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgtggg |
36411604 |
T |
|
| Q |
140 |
acagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaa |
239 |
Q |
| |
|
|||||||| | | ||||||||||||| ||||||||||||| | ||| |||||| |||||| |||||||||||| |||| |||||||||||||||| || |
|
|
| T |
36411605 |
acagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggaccaaacagtaattgtgaccctttgaa |
36411704 |
T |
|
| Q |
240 |
ctttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtat |
303 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
36411705 |
ctttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
36411768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 36416836 - 36417099
Alignment:
| Q |
40 |
gatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtggg |
139 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||| |||||||||||| || ||| ||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36416836 |
gatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgtggg |
36416935 |
T |
|
| Q |
140 |
acagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaa |
239 |
Q |
| |
|
|||||||| | | ||||||||||||| ||||||||||||| | ||| |||||| |||||| |||||||||||| |||| |||||||||||||||| || |
|
|
| T |
36416936 |
acagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggaccaaacagtaattgtgaccctttgaa |
36417035 |
T |
|
| Q |
240 |
ctttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtat |
303 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
36417036 |
ctttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtat |
36417099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 36368900 - 36369164
Alignment:
| Q |
40 |
gatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtggg |
139 |
Q |
| |
|
||||| |||||||||||| | | ||||||||||||| |||||||||||| ||||| ||| | ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36368900 |
gatgacaactatgtagcacttacgtataacatgttcgataagtctgtcattactagaatagcggttcagcaatctggtttctttcaaacattcatgtggg |
36368999 |
T |
|
| Q |
140 |
acagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaa |
239 |
Q |
| |
|
||||||||| | ||||||||| ||||| ||||||||||||| | ||| |||||| |||||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
36369000 |
acagtcaaaagagccaatggaaccggtactggtctgaaccaacagaccaatgtgataactatggaacctgtggatcaaacagtaattgtgacctttttaa |
36369099 |
T |
|
| Q |
240 |
ctttgatgactttaagtgttcttgtttacttggttatgaa-cccaaatttccacgtgattggtat |
303 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
36369100 |
ctttgaagactttaagtgcacttgtttacttggttttgaagcaaaaatttccacgtgattggtat |
36369164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 36404155 - 36404454
Alignment:
| Q |
1 |
cgagatatggcgattttgaatgtttcttttttggaagatgatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtag |
100 |
Q |
| |
|
|||||||||| | ||| || ||||||||| |||||||||| |||| |||||| |||||||||||||||| | |||||||||||| ||||| || |
|
|
| T |
36404155 |
cgagatatggaaacttttaacgtttcttttgtggaagatgaa---aactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaag |
36404251 |
T |
|
| Q |
101 |
tgattcagcaatctggtttccttcaaacattcaggtgggacagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaacta |
200 |
Q |
| |
|
| || | |||||||||||| |||||| ||||| ||||| | | ||| | ||||||| ||||| || || |||||| | ||| |||||| |||||| |
|
|
| T |
36404252 |
ttgttaatcaatctggtttctttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataacta |
36404351 |
T |
|
| Q |
201 |
tggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattgg |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
36404352 |
tggaacatgtggatcaaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattgg |
36404451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 43 - 303
Target Start/End: Original strand, 36397261 - 36397521
Alignment:
| Q |
43 |
gataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtgggaca |
142 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| | ||||||||||||| ||||| |||| ||||||||||||||||| |||||| ||||| ||| ||| |
|
|
| T |
36397261 |
gataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctggtttcattcaaatattcacttggaaca |
36397360 |
T |
|
| Q |
143 |
gtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaactt |
242 |
Q |
| |
|
||||| | | ||||||| | ||| |||||| |||||| | || |||||| |||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
36397361 |
atcaaaagagtcaatggaacaggttctggtcagaaccaacaaaccaatgtgataactatggaacgtgtggatcaaacagtaattgtgaccctttgaactt |
36397460 |
T |
|
| Q |
243 |
tgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtat |
303 |
Q |
| |
|
||| |||||||||| | ||||||||||||| |||||| ||||||||| | ||||||||| |
|
|
| T |
36397461 |
tgagaactttaagtgcacgtgtttacttggttttgaaccaaaatttccaagcgattggtat |
36397521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 36433528 - 36433791
Alignment:
| Q |
40 |
gatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcaggtggg |
139 |
Q |
| |
|
||||| ||| |||||||| || | ||||||||| | | |||||||||| | |||||| | ||| ||||||||||||||||| |||||| ||| | ||||| |
|
|
| T |
36433528 |
gatgacaacaatgtagcactcacgtataacatggttgataagtctgtcgttactaggatggtggttcagcaatctggtttctttcaaatattaatgtggg |
36433627 |
T |
|
| Q |
140 |
acagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatggtaattgtgacccttttaa |
239 |
Q |
| |
|
||| | ||| | ||||||| || || || || ||||| | || |||||| |||||||||||||||||||||||| |||||||||||||| | || |
|
|
| T |
36433628 |
acaataaaaaaagtcaatggaaccagttctattcacaaccaacaaaccaatgtgataactatggaacatgtggatcaaacagtaattgtgaccctatgaa |
36433727 |
T |
|
| Q |
240 |
ctttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtat |
303 |
Q |
| |
|
||||| ||||| || ||| ||||||||| ||||| ||||||||||| |||| | ||||||||| |
|
|
| T |
36433728 |
ctttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggcgattggtat |
36433791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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