View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_44 (Length: 332)
Name: NF16688_low_44
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 9728463 - 9728142
Alignment:
| Q |
1 |
tcaggtagaacaaggagaataattacaagacccacttcaagaggttgttgcttaatttcaaaacaaatcacacttaaggaatgtttaaaatgattatgnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9728463 |
tcaggtagaacaaggagaataattacaagacccacttcaagaggttgttgcttaatttcaaaacaaatcactcttaaggaatgtttaaaatgattatgtt |
9728364 |
T |
|
| Q |
101 |
nnnnnngtttctttacaatttctaaaataaacaagtcttttgtatgtaatctaacatgtttcattttctcatttttccttactagttaagattggagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728363 |
tttttggtttctttacaatttctaaaataaacaagtcttttgtatgtaatctaacatgtttcattttctcatttttccttactagttaagattggagtga |
9728264 |
T |
|
| Q |
201 |
caacggctgttcctattcgatgcatgtcaacggcggaagatgatcaagttcaacgggttaaagtactaacatcaactgatgataagtatggcggcgttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
9728263 |
caacggctgttcctattcgatgcatgtcaacggcggcagatgatcaagttcaacgggttaaagtactaaaatcaaccgatgataagtatggcggcgttat |
9728164 |
T |
|
| Q |
301 |
tgtggagctggatcagcctatg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
9728163 |
tgtggagctggatcagcctatg |
9728142 |
T |
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