View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_45 (Length: 331)
Name: NF16688_low_45
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 38712984 - 38713286
Alignment:
| Q |
19 |
taattgaagaacatatatataggtgcatctgaatttaatcatttataagaaaataaagtaatccaaatccaacacaaaatgatcaaccagctgaaaggnn |
118 |
Q |
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| T |
38712984 |
taattgaagaacatatatataggtgaatctgaatttaatcatttataagagaataaagtaatccaaatccaacacaaaatgatcaaccagctgaaaggaa |
38713083 |
T |
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| Q |
119 |
nnnnngaagtgctagaaattaaagaagactataactacatgaattaatttgcaaagaccctttaaaattttggagttgataaggtccataatagaagtta |
218 |
Q |
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| T |
38713084 |
aaaaagaa-tgtta--agtta-------ctacaactacatgaattaatttgcaaagaccctttaaaattttggagttgataaggtccataatagaagtta |
38713173 |
T |
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| Q |
219 |
agttactagtacctgaaggagggggtgagagggatgagaagggagacagtgagggcaaatggtgagacaacagtgcaaacaaaggatgttcttttcgttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38713174 |
agttactagtacctgaaggagggggtgagagggatgagaagggagacagtgagggcaaatggtgagacaacagtgcaaacaaaggatgttcttttcgttc |
38713273 |
T |
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| Q |
319 |
ttcctttggttct |
331 |
Q |
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||||||||||||| |
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| T |
38713274 |
ttcctttggttct |
38713286 |
T |
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