View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16688_low_47 (Length: 313)

Name: NF16688_low_47
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16688_low_47
NF16688_low_47
[»] chr1 (1 HSPs)
chr1 (30-313)||(52364426-52364711)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 52364711 - 52364426
Alignment:
Q  30 atatagacacacacatagtcgttcaaaaatgcaactctaaattaagatccaaatagnnnnnnnnatagggg-agttaccaaatannnnnnnnn-cttccg 127  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||||||          ||||||    
T  52364711 atatagacacgcacatagtcgttcaaaaatgcaactctaaattaagatccaaatagtttttttcatagggggagttaccaaatatatattttttcttccg 52364612  T
Q  128 caactaactaatcgttgaaatcaaaatagaactagatagatatattatattctagagggctgttaaaagcactatcccactgtaattttaaaatatatcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  52364611 caactaactaatcgttgaaatcaaaatagaactagatagatatattatattctagagggttgttaaaagcaccatcccactgtaattttaaaatatatcc 52364512  T
Q  228 cattccacatagtgtgaaattactataataaccatgcatctaaaagaaattcaatattaatcattttcctcttcccaccctcacca 313  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  52364511 cattccacatggtgtgaaattactataataaccatgcatctaaaagaaattcaatactaatcattttcctcttcccaccatcacca 52364426  T

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