View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16688_low_48 (Length: 312)
Name: NF16688_low_48
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 50718142 - 50717863
Alignment:
| Q |
19 |
agggtcaaatggttggtgatgaagaggagctatgaagagttccatggctatgaaaataatgcaacttgccatgatgagatgaagctctacgtatctactt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50718142 |
agggtcaaatggttggtgatgaagaggagctatgaagagttccatggctatgaaaataatgcaacttgccatgatgagatgaagctctacgtatctactt |
50718043 |
T |
|
| Q |
119 |
attttggtgggaaaccatagggttgatgtgtaggacttgaaagtataacatagaaagtggacctttatgttgttgaaaaggtgccataaaccaattacaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50718042 |
attttggtgggaaaccatagggttgatgtgtaggacttgaaagtataacatagaaagtggagctttatgttgttgaaaaggtgccataaaccaattacaa |
50717943 |
T |
|
| Q |
219 |
agaaagcaaaccctaaaatttcatgtccctccatagtgcctagctattaggtaaaaacacaacacacgaaaaagaattat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50717942 |
agaaagcaaaccctaaaatttcatgtccctccatagtgcctagctattaggtaaaaacacaacacacgaaaaagaattat |
50717863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 50712819 - 50712763
Alignment:
| Q |
79 |
gcaacttgccatgatgagatgaagctctacgtatctacttattttggtgggaaacca |
135 |
Q |
| |
|
||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
50712819 |
gcaacttgccacaatgaaataaagctctaagtatctactaattttggtgggaaacca |
50712763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University