View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16688_low_52 (Length: 297)
Name: NF16688_low_52
Description: NF16688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16688_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 55342412 - 55342665
Alignment:
| Q |
17 |
caaaggaaacacaaatgaaaaagtagcctgcatggatcttagttaagaatggttgtgactgtgaatgtgatggcttggtgattggtttagcattagtagt |
116 |
Q |
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| T |
55342412 |
caaaggaaacacaaatgaaaaagtagcctgcatggatcttagttaagaatggttgtgactgtgaatgtgatggcttggtgattggtttagcattagtagt |
55342511 |
T |
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| Q |
117 |
attgtttgtggtagcacacacaattatgtcaattgttggcttgaccgcaacctcatccattctatagttaaatataggagtgattcaaacttgatttata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55342512 |
attgtttgtggtagcacacacaattatgtcaattgttggcttgaccgcaacctcacccattctatagttaaatataggagtgattcaaacttgatttata |
55342611 |
T |
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| Q |
217 |
tggattggtgtttgcttctcgttttgtccctacccaattgagcatctatatata |
270 |
Q |
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| T |
55342612 |
tggattggtgtttgcttctcgttttgtccctatccaattgagcatctatatata |
55342665 |
T |
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